Hb_001486_270

Information

Type -
Description -
Location Contig1486: 204797-206331
Sequence    

Annotation

kegg
ID rcu:RCOM_1321930
description annexin, putative
nr
ID AKA87342.1
description Ann10 [Manihot esculenta]
swissprot
ID P27216
description Annexin A13 OS=Homo sapiens GN=ANXA13 PE=1 SV=3
trembl
ID B9SIA1
description Annexin, putative OS=Ricinus communis GN=RCOM_1321930 PE=4 SV=1
Gene Ontology
ID GO:0005509
description annexin d8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12264: 204721-204825 , PASA_asmbl_12265: 204980-205430 , PASA_asmbl_12266: 205856-206235
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001486_270 0.0 - - Ann10 [Manihot esculenta]
2 Hb_000260_280 0.1724590369 - - auxin:hydrogen symporter, putative [Ricinus communis]
3 Hb_002228_080 0.185934375 - - hypothetical protein JCGZ_12924 [Jatropha curcas]
4 Hb_029920_020 0.1911669966 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Jatropha curcas]
5 Hb_001597_050 0.1948138605 - - -
6 Hb_175933_010 0.1984400755 - - NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus communis]
7 Hb_000192_020 0.2060988869 - - hypothetical protein JCGZ_17351 [Jatropha curcas]
8 Hb_000345_080 0.2109652453 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
9 Hb_001454_100 0.2156498133 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
10 Hb_001307_110 0.2175726585 - - PREDICTED: uncharacterized protein LOC105644507 [Jatropha curcas]
11 Hb_012753_030 0.2179879646 - - PREDICTED: probable transcriptional regulator SLK3 [Jatropha curcas]
12 Hb_000157_050 0.21831485 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000217_010 0.2194147117 - - hypothetical protein POPTR_0341s00210g [Populus trichocarpa]
14 Hb_000382_020 0.2201438573 - - PREDICTED: uncharacterized protein LOC105633610 [Jatropha curcas]
15 Hb_025466_020 0.2217863305 - - tubulin beta-6 [Brassica oleracea var. italica]
16 Hb_001584_240 0.2242778707 - - ADP-ribosylation factor [Gossypium barbadense]
17 Hb_006903_030 0.2249071285 - - PREDICTED: uncharacterized protein LOC105640666 [Jatropha curcas]
18 Hb_000210_100 0.2259045513 - - pepsin A, putative [Ricinus communis]
19 Hb_000483_400 0.2266695242 - - PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Jatropha curcas]
20 Hb_003304_110 0.228254295 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001486_270 Hb_001486_270 Hb_000260_280 Hb_000260_280 Hb_001486_270--Hb_000260_280 Hb_002228_080 Hb_002228_080 Hb_001486_270--Hb_002228_080 Hb_029920_020 Hb_029920_020 Hb_001486_270--Hb_029920_020 Hb_001597_050 Hb_001597_050 Hb_001486_270--Hb_001597_050 Hb_175933_010 Hb_175933_010 Hb_001486_270--Hb_175933_010 Hb_000192_020 Hb_000192_020 Hb_001486_270--Hb_000192_020 Hb_032972_010 Hb_032972_010 Hb_000260_280--Hb_032972_010 Hb_025466_020 Hb_025466_020 Hb_000260_280--Hb_025466_020 Hb_000210_100 Hb_000210_100 Hb_000260_280--Hb_000210_100 Hb_001454_100 Hb_001454_100 Hb_000260_280--Hb_001454_100 Hb_000260_280--Hb_029920_020 Hb_006903_030 Hb_006903_030 Hb_000260_280--Hb_006903_030 Hb_007110_010 Hb_007110_010 Hb_002228_080--Hb_007110_010 Hb_003589_080 Hb_003589_080 Hb_002228_080--Hb_003589_080 Hb_002228_080--Hb_001597_050 Hb_000157_050 Hb_000157_050 Hb_002228_080--Hb_000157_050 Hb_000173_050 Hb_000173_050 Hb_002228_080--Hb_000173_050 Hb_002320_080 Hb_002320_080 Hb_029920_020--Hb_002320_080 Hb_029920_020--Hb_000192_020 Hb_012753_030 Hb_012753_030 Hb_029920_020--Hb_012753_030 Hb_029920_020--Hb_001454_100 Hb_001584_240 Hb_001584_240 Hb_001597_050--Hb_001584_240 Hb_000740_150 Hb_000740_150 Hb_001597_050--Hb_000740_150 Hb_000776_060 Hb_000776_060 Hb_001597_050--Hb_000776_060 Hb_000483_400 Hb_000483_400 Hb_001597_050--Hb_000483_400 Hb_003875_010 Hb_003875_010 Hb_001597_050--Hb_003875_010 Hb_000240_120 Hb_000240_120 Hb_175933_010--Hb_000240_120 Hb_001208_030 Hb_001208_030 Hb_175933_010--Hb_001208_030 Hb_008206_100 Hb_008206_100 Hb_175933_010--Hb_008206_100 Hb_175933_010--Hb_032972_010 Hb_001208_040 Hb_001208_040 Hb_175933_010--Hb_001208_040 Hb_001969_020 Hb_001969_020 Hb_175933_010--Hb_001969_020 Hb_003304_110 Hb_003304_110 Hb_000192_020--Hb_003304_110 Hb_000217_010 Hb_000217_010 Hb_000192_020--Hb_000217_010 Hb_000192_020--Hb_000260_280 Hb_002743_040 Hb_002743_040 Hb_000192_020--Hb_002743_040 Hb_000192_020--Hb_012753_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0730922 0.398157 3.34494 12.8614 0.0421527 0.408748
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.56309 5.42861 3.35264 0.782255 2.23558

CAGE analysis