Hb_001486_340

Information

Type -
Description -
Location Contig1486: 249117-254645
Sequence    

Annotation

kegg
ID mdm:103444440
description double-stranded RNA-binding protein 4-like
nr
ID XP_012070414.1
description PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
swissprot
ID Q8H1D4
description Double-stranded RNA-binding protein 4 OS=Arabidopsis thaliana GN=DBR4 PE=1 SV=1
trembl
ID A0A067L599
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02690 PE=4 SV=1
Gene Ontology
ID GO:0016458
description double-stranded rna-binding protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12269: 249611-251697 , PASA_asmbl_12270: 251043-251277
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001486_340 0.0 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
2 Hb_000538_100 0.0648686308 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000179_030 0.0652663203 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
4 Hb_006355_010 0.066731699 - - PREDICTED: protein NLRC3 [Jatropha curcas]
5 Hb_000308_030 0.0701672492 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
6 Hb_000174_110 0.0711289801 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
7 Hb_006620_020 0.0721889807 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
8 Hb_131646_010 0.0723529131 - - protein arginine n-methyltransferase, putative [Ricinus communis]
9 Hb_000059_140 0.0726883998 - - rnase h, putative [Ricinus communis]
10 Hb_003952_070 0.0728673928 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_003029_030 0.0729509452 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
12 Hb_011942_080 0.0729568182 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
13 Hb_001357_380 0.0731557086 - - PREDICTED: probable tetraacyldisaccharide 4'-kinase, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_000334_270 0.0743510127 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
15 Hb_011609_080 0.0750453241 - - uv excision repair protein rad23, putative [Ricinus communis]
16 Hb_000853_230 0.0760566072 - - syntaxin, putative [Ricinus communis]
17 Hb_008159_020 0.077873988 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
18 Hb_008406_110 0.0779358541 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]
19 Hb_142439_010 0.0781103526 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
20 Hb_004577_020 0.0784959793 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001486_340 Hb_001486_340 Hb_000538_100 Hb_000538_100 Hb_001486_340--Hb_000538_100 Hb_000179_030 Hb_000179_030 Hb_001486_340--Hb_000179_030 Hb_006355_010 Hb_006355_010 Hb_001486_340--Hb_006355_010 Hb_000308_030 Hb_000308_030 Hb_001486_340--Hb_000308_030 Hb_000174_110 Hb_000174_110 Hb_001486_340--Hb_000174_110 Hb_006620_020 Hb_006620_020 Hb_001486_340--Hb_006620_020 Hb_006827_020 Hb_006827_020 Hb_000538_100--Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_000538_100--Hb_007317_110 Hb_006252_040 Hb_006252_040 Hb_000538_100--Hb_006252_040 Hb_103012_010 Hb_103012_010 Hb_000538_100--Hb_103012_010 Hb_002304_090 Hb_002304_090 Hb_000538_100--Hb_002304_090 Hb_003952_070 Hb_003952_070 Hb_000538_100--Hb_003952_070 Hb_000179_030--Hb_006355_010 Hb_008159_020 Hb_008159_020 Hb_000179_030--Hb_008159_020 Hb_023386_040 Hb_023386_040 Hb_000179_030--Hb_023386_040 Hb_005914_060 Hb_005914_060 Hb_000179_030--Hb_005914_060 Hb_000179_030--Hb_000308_030 Hb_002175_030 Hb_002175_030 Hb_006355_010--Hb_002175_030 Hb_000334_270 Hb_000334_270 Hb_006355_010--Hb_000334_270 Hb_000771_180 Hb_000771_180 Hb_006355_010--Hb_000771_180 Hb_005337_090 Hb_005337_090 Hb_006355_010--Hb_005337_090 Hb_000308_030--Hb_005337_090 Hb_000915_020 Hb_000915_020 Hb_000308_030--Hb_000915_020 Hb_008453_140 Hb_008453_140 Hb_000308_030--Hb_008453_140 Hb_021576_100 Hb_021576_100 Hb_000308_030--Hb_021576_100 Hb_001926_030 Hb_001926_030 Hb_000308_030--Hb_001926_030 Hb_010068_040 Hb_010068_040 Hb_000174_110--Hb_010068_040 Hb_000174_110--Hb_006620_020 Hb_005618_160 Hb_005618_160 Hb_000174_110--Hb_005618_160 Hb_054865_100 Hb_054865_100 Hb_000174_110--Hb_054865_100 Hb_000174_110--Hb_002175_030 Hb_000853_230 Hb_000853_230 Hb_006620_020--Hb_000853_230 Hb_000879_200 Hb_000879_200 Hb_006620_020--Hb_000879_200 Hb_004055_150 Hb_004055_150 Hb_006620_020--Hb_004055_150 Hb_006620_020--Hb_001926_030 Hb_006620_020--Hb_054865_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.29068 6.41597 5.70434 4.26102 9.30421 9.88897
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.83526 6.21688 4.16174 5.51564 2.48353

CAGE analysis