Hb_001486_350

Information

Type -
Description -
Location Contig1486: 255729-260996
Sequence    

Annotation

kegg
ID rcu:RCOM_1321820
description 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative (EC:2.1.1.14)
nr
ID XP_002525709.1
description 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
swissprot
ID Q42699
description 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1
trembl
ID B9SI90
description 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative OS=Ricinus communis GN=RCOM_1321820 PE=3 SV=1
Gene Ontology
ID GO:0003871
description 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12271: 255734-260955
cDNA
(Sanger)
(ID:Location)		 011_D23.ab1: 258606-260955

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001486_350 0.0 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
2 Hb_000806_130 0.0989611722 - - Adenosine kinase 2 [Theobroma cacao]
3 Hb_000696_070 0.1149344455 - - PREDICTED: aspartic proteinase-like protein 1 [Jatropha curcas]
4 Hb_000236_190 0.129631333 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
5 Hb_012707_010 0.1308594963 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
6 Hb_002781_050 0.1345122368 - - cytochrome B5 isoform 1, putative [Ricinus communis]
7 Hb_000300_420 0.146161198 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
8 Hb_002151_060 0.1472178444 - - PREDICTED: DNA-directed RNA polymerase III subunit rpc4 [Jatropha curcas]
9 Hb_009674_010 0.1522926871 - - AAEL007687-PA [Aedes aegypti]
10 Hb_026527_010 0.1536277636 - - PREDICTED: caffeoylshikimate esterase-like [Populus euphratica]
11 Hb_000950_030 0.156509883 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g10290 [Nelumbo nucifera]
12 Hb_001329_180 0.1565205314 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
13 Hb_001119_070 0.1625310318 - - methylenetetrahydrofolate reductase, putative [Ricinus communis]
14 Hb_166053_010 0.169414645 - - glyceraldehyde-3-phosphate dehydrogenase, partial [Vernicia fordii]
15 Hb_001546_010 0.1743769096 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000236_180 0.1749037337 - - serine hydroxymethyltransferase, putative [Ricinus communis]
17 Hb_004055_020 0.1756190057 - - PREDICTED: uncharacterized protein LOC105631433 [Jatropha curcas]
18 Hb_001148_100 0.1763952661 - - -
19 Hb_003470_110 0.1769585292 - - unnamed protein product [Vitis vinifera]
20 Hb_000027_210 0.1771153693 - - Os01g0689300, partial [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_001486_350 Hb_001486_350 Hb_000806_130 Hb_000806_130 Hb_001486_350--Hb_000806_130 Hb_000696_070 Hb_000696_070 Hb_001486_350--Hb_000696_070 Hb_000236_190 Hb_000236_190 Hb_001486_350--Hb_000236_190 Hb_012707_010 Hb_012707_010 Hb_001486_350--Hb_012707_010 Hb_002781_050 Hb_002781_050 Hb_001486_350--Hb_002781_050 Hb_000300_420 Hb_000300_420 Hb_001486_350--Hb_000300_420 Hb_001329_180 Hb_001329_180 Hb_000806_130--Hb_001329_180 Hb_000806_130--Hb_000696_070 Hb_000806_130--Hb_000236_190 Hb_001119_070 Hb_001119_070 Hb_000806_130--Hb_001119_070 Hb_000806_130--Hb_000300_420 Hb_000696_070--Hb_002781_050 Hb_000696_070--Hb_001119_070 Hb_001369_630 Hb_001369_630 Hb_000696_070--Hb_001369_630 Hb_026527_010 Hb_026527_010 Hb_000696_070--Hb_026527_010 Hb_000236_190--Hb_000300_420 Hb_000236_190--Hb_001119_070 Hb_000236_190--Hb_001329_180 Hb_009674_010 Hb_009674_010 Hb_000236_190--Hb_009674_010 Hb_000950_030 Hb_000950_030 Hb_012707_010--Hb_000950_030 Hb_012707_010--Hb_000696_070 Hb_012707_010--Hb_000806_130 Hb_002157_270 Hb_002157_270 Hb_012707_010--Hb_002157_270 Hb_001989_100 Hb_001989_100 Hb_012707_010--Hb_001989_100 Hb_003602_020 Hb_003602_020 Hb_002781_050--Hb_003602_020 Hb_001148_100 Hb_001148_100 Hb_002781_050--Hb_001148_100 Hb_001148_090 Hb_001148_090 Hb_002781_050--Hb_001148_090 Hb_002781_050--Hb_001369_630 Hb_048476_060 Hb_048476_060 Hb_002781_050--Hb_048476_060 Hb_000077_100 Hb_000077_100 Hb_000300_420--Hb_000077_100 Hb_000300_420--Hb_001329_180 Hb_000236_180 Hb_000236_180 Hb_000300_420--Hb_000236_180 Hb_000580_110 Hb_000580_110 Hb_000300_420--Hb_000580_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.23871 12.711 29.6915 235.948 7.60005 10.9443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.7133 16.2277 27.1367 97.4868 90.8399

CAGE analysis