Hb_001487_020

Information

Type -
Description -
Location Contig1487: 26695-31306
Sequence    

Annotation

kegg
ID rcu:RCOM_0926970
description sulfate transporter, putative
nr
ID XP_012078649.1
description PREDICTED: probable sulfate transporter 3.5 isoform X1 [Jatropha curcas]
swissprot
ID Q94LW6
description Probable sulfate transporter 3.5 OS=Arabidopsis thaliana GN=SULTR3;5 PE=2 SV=1
trembl
ID A0A067K886
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13227 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable sulfate transporter

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12280: 27549-28838 , PASA_asmbl_12281: 29312-30098
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001487_020 0.0 - - PREDICTED: probable sulfate transporter 3.5 isoform X1 [Jatropha curcas]
2 Hb_047690_010 0.0391823366 - - Phosphoprotein phosphatase [Theobroma cacao]
3 Hb_150643_010 0.0413503805 - - lipid binding protein, putative [Ricinus communis]
4 Hb_135811_020 0.0758493224 - - hypothetical protein JCGZ_19965 [Jatropha curcas]
5 Hb_003253_060 0.0792447231 - - PREDICTED: tropinone reductase-like 1 [Vitis vinifera]
6 Hb_046117_050 0.0876669801 transcription factor TF Family: C2H2 hypothetical protein POPTR_0009s14590g [Populus trichocarpa]
7 Hb_005081_080 0.0876751175 - - hypothetical protein JCGZ_16787 [Jatropha curcas]
8 Hb_000532_060 0.1087170794 - - copper-transporting atpase p-type, putative [Ricinus communis]
9 Hb_000170_230 0.1149160269 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
10 Hb_003376_340 0.1195035183 - - conserved hypothetical protein [Ricinus communis]
11 Hb_012055_100 0.1210614643 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
12 Hb_128912_010 0.1214068795 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
13 Hb_004656_020 0.1243390393 - - EF hand domain-containing protein, variant [Neurospora crassa OR74A]
14 Hb_000345_190 0.1244049184 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s02730g [Populus trichocarpa]
15 Hb_000260_320 0.1253758024 - - PREDICTED: uncharacterized protein LOC105649058 [Jatropha curcas]
16 Hb_000077_470 0.1315598488 - - PREDICTED: anthranilate N-methyltransferase-like [Jatropha curcas]
17 Hb_007785_020 0.1369326646 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
18 Hb_045810_010 0.1425679195 - - PREDICTED: laccase-12-like [Jatropha curcas]
19 Hb_001080_040 0.145115548 - - cytochrome P450, putative [Ricinus communis]
20 Hb_001953_130 0.146325429 - - PREDICTED: uncharacterized protein LOC105648901 [Jatropha curcas]

Gene co-expression network

sample Hb_001487_020 Hb_001487_020 Hb_047690_010 Hb_047690_010 Hb_001487_020--Hb_047690_010 Hb_150643_010 Hb_150643_010 Hb_001487_020--Hb_150643_010 Hb_135811_020 Hb_135811_020 Hb_001487_020--Hb_135811_020 Hb_003253_060 Hb_003253_060 Hb_001487_020--Hb_003253_060 Hb_046117_050 Hb_046117_050 Hb_001487_020--Hb_046117_050 Hb_005081_080 Hb_005081_080 Hb_001487_020--Hb_005081_080 Hb_047690_010--Hb_150643_010 Hb_047690_010--Hb_135811_020 Hb_047690_010--Hb_003253_060 Hb_004656_020 Hb_004656_020 Hb_047690_010--Hb_004656_020 Hb_047690_010--Hb_046117_050 Hb_150643_010--Hb_135811_020 Hb_150643_010--Hb_003253_060 Hb_150643_010--Hb_046117_050 Hb_007785_020 Hb_007785_020 Hb_150643_010--Hb_007785_020 Hb_135811_020--Hb_003253_060 Hb_135811_020--Hb_046117_050 Hb_000535_030 Hb_000535_030 Hb_135811_020--Hb_000535_030 Hb_003253_060--Hb_004656_020 Hb_009083_080 Hb_009083_080 Hb_003253_060--Hb_009083_080 Hb_000170_230 Hb_000170_230 Hb_046117_050--Hb_000170_230 Hb_000532_060 Hb_000532_060 Hb_046117_050--Hb_000532_060 Hb_003376_340 Hb_003376_340 Hb_046117_050--Hb_003376_340 Hb_000345_190 Hb_000345_190 Hb_046117_050--Hb_000345_190 Hb_046117_050--Hb_005081_080 Hb_081448_010 Hb_081448_010 Hb_005081_080--Hb_081448_010 Hb_001021_140 Hb_001021_140 Hb_005081_080--Hb_001021_140 Hb_005081_080--Hb_000170_230 Hb_069232_010 Hb_069232_010 Hb_005081_080--Hb_069232_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.633 0 0.736323 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.17994 0

CAGE analysis