Hb_001488_030

Information

Type -
Description -
Location Contig1488: 22550-25498
Sequence    

Annotation

kegg
ID rcu:RCOM_0525570
description Biotin carboxyl carrier protein subunit of of Het-ACCase (BCCP2) (EC:6.4.1.2)
nr
ID AFP99173.1
description biotin carboxyl carrier protein [Vernicia fordii]
swissprot
ID Q9LLC1
description Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic OS=Arabidopsis thaliana GN=BCCP2 PE=2 SV=1
trembl
ID J7HI96
description Biotin carboxyl carrier protein OS=Vernicia fordii PE=4 SV=1
Gene Ontology
ID GO:0009317
description biotin carboxyl carrier protein of acetyl- carboxylase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12282: 14645-21955 , PASA_asmbl_12288: 22662-24154 , PASA_asmbl_12289: 24465-25477 , PASA_asmbl_12295: 18042-66881 , PASA_asmbl_12296: 21443-21954
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001488_030 0.0 - - biotin carboxyl carrier protein [Vernicia fordii]
2 Hb_000122_190 0.1293311973 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
3 Hb_000005_180 0.1295680639 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000035_240 0.1315435137 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001541_110 0.1325934431 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
6 Hb_000049_110 0.1355625067 - - PREDICTED: subtilisin-like protease SBT1.2 [Jatropha curcas]
7 Hb_001587_180 0.137706353 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
8 Hb_169116_010 0.1390133195 - - PREDICTED: fatty-acid-binding protein 1 [Jatropha curcas]
9 Hb_000442_040 0.1394085643 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
10 Hb_002836_120 0.1397942201 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 [Populus euphratica]
11 Hb_003411_090 0.1411255257 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
12 Hb_001329_090 0.1423478824 - - conserved hypothetical protein [Ricinus communis]
13 Hb_021732_010 0.1516109274 - - biotin carboxylase [Vernicia fordii]
14 Hb_001946_140 0.1520605685 - - PREDICTED: heme oxygenase 1, chloroplastic-like [Jatropha curcas]
15 Hb_014834_130 0.1545927255 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]
16 Hb_003077_150 0.15510525 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
17 Hb_000152_180 0.1556923076 - - PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Jatropha curcas]
18 Hb_000676_020 0.1598538288 - - PREDICTED: uncharacterized protein LOC105645386 [Jatropha curcas]
19 Hb_001301_340 0.1601431314 - - endoribonuclease L-PSP family protein [Populus trichocarpa]
20 Hb_000365_130 0.160675143 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]

Gene co-expression network

sample Hb_001488_030 Hb_001488_030 Hb_000122_190 Hb_000122_190 Hb_001488_030--Hb_000122_190 Hb_000005_180 Hb_000005_180 Hb_001488_030--Hb_000005_180 Hb_000035_240 Hb_000035_240 Hb_001488_030--Hb_000035_240 Hb_001541_110 Hb_001541_110 Hb_001488_030--Hb_001541_110 Hb_000049_110 Hb_000049_110 Hb_001488_030--Hb_000049_110 Hb_001587_180 Hb_001587_180 Hb_001488_030--Hb_001587_180 Hb_001900_140 Hb_001900_140 Hb_000122_190--Hb_001900_140 Hb_000122_190--Hb_001587_180 Hb_007002_020 Hb_007002_020 Hb_000122_190--Hb_007002_020 Hb_004965_110 Hb_004965_110 Hb_000122_190--Hb_004965_110 Hb_027506_040 Hb_027506_040 Hb_000122_190--Hb_027506_040 Hb_000003_780 Hb_000003_780 Hb_000122_190--Hb_000003_780 Hb_002836_120 Hb_002836_120 Hb_000005_180--Hb_002836_120 Hb_001329_090 Hb_001329_090 Hb_000005_180--Hb_001329_090 Hb_169116_010 Hb_169116_010 Hb_000005_180--Hb_169116_010 Hb_003077_150 Hb_003077_150 Hb_000005_180--Hb_003077_150 Hb_000442_040 Hb_000442_040 Hb_000005_180--Hb_000442_040 Hb_001301_340 Hb_001301_340 Hb_000035_240--Hb_001301_340 Hb_001946_140 Hb_001946_140 Hb_000035_240--Hb_001946_140 Hb_000035_240--Hb_001329_090 Hb_000390_090 Hb_000390_090 Hb_000035_240--Hb_000390_090 Hb_000008_370 Hb_000008_370 Hb_000035_240--Hb_000008_370 Hb_009252_060 Hb_009252_060 Hb_000035_240--Hb_009252_060 Hb_007451_040 Hb_007451_040 Hb_001541_110--Hb_007451_040 Hb_001541_110--Hb_000003_780 Hb_001541_110--Hb_001587_180 Hb_000413_060 Hb_000413_060 Hb_001541_110--Hb_000413_060 Hb_001863_120 Hb_001863_120 Hb_001541_110--Hb_001863_120 Hb_000926_080 Hb_000926_080 Hb_001541_110--Hb_000926_080 Hb_046823_010 Hb_046823_010 Hb_000049_110--Hb_046823_010 Hb_003411_090 Hb_003411_090 Hb_000049_110--Hb_003411_090 Hb_000525_050 Hb_000525_050 Hb_000049_110--Hb_000525_050 Hb_000796_010 Hb_000796_010 Hb_000049_110--Hb_000796_010 Hb_001250_070 Hb_001250_070 Hb_000049_110--Hb_001250_070 Hb_001587_180--Hb_001900_140 Hb_001287_040 Hb_001287_040 Hb_001587_180--Hb_001287_040 Hb_001587_180--Hb_000003_780 Hb_005946_040 Hb_005946_040 Hb_001587_180--Hb_005946_040 Hb_001935_100 Hb_001935_100 Hb_001587_180--Hb_001935_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.93034 1.44718 13.553 4.17742 1.17728 1.15542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.21339 4.95645 3.6891 2.25467 8.08812

CAGE analysis