Hb_001488_040

Information

Type -
Description -
Location Contig1488: 26060-47408
Sequence    

Annotation

kegg
ID rcu:RCOM_0525580
description pearli, putative
nr
ID XP_012084811.1
description PREDICTED: nipped-B-like protein A [Jatropha curcas]
swissprot
ID Q6KCD5
description Nipped-B-like protein OS=Mus musculus GN=Nipbl PE=1 SV=1
trembl
ID B9SJD1
description Pearli, putative OS=Ricinus communis GN=RCOM_0525580 PE=4 SV=1
Gene Ontology
ID GO:0008270
description nipped-b-like protein isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12286: 33697-34191 , PASA_asmbl_12287: 25881-32202 , PASA_asmbl_12290: 30371-32622 , PASA_asmbl_12293: 41108-46959
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001488_040 0.0 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
2 Hb_001862_110 0.0752210318 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
3 Hb_000699_210 0.0763877114 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
4 Hb_009486_160 0.0819904912 - - PREDICTED: metacaspase-1 [Jatropha curcas]
5 Hb_001427_150 0.0833142471 - - PREDICTED: uncharacterized protein LOC105637790 isoform X1 [Jatropha curcas]
6 Hb_011249_060 0.0866381076 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
7 Hb_005765_040 0.0924951091 - - transcription elongation factor s-II, putative [Ricinus communis]
8 Hb_002812_010 0.0980552742 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X1 [Jatropha curcas]
9 Hb_004899_040 0.0981366651 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
10 Hb_002400_160 0.0987912258 - - Ubiquitin-protein ligase BRE1A, putative [Ricinus communis]
11 Hb_002249_050 0.0996941461 - - Auxin response factor, putative [Ricinus communis]
12 Hb_012490_010 0.0998574515 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
13 Hb_013358_060 0.1007053281 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
14 Hb_000676_040 0.1039802719 - - hypothetical protein POPTR_0007s13320g [Populus trichocarpa]
15 Hb_000617_190 0.1042326261 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase [Jatropha curcas]
16 Hb_001257_100 0.1044398836 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
17 Hb_004551_020 0.105228787 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
18 Hb_002897_050 0.1052401144 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
19 Hb_000926_150 0.1055483039 - - PREDICTED: splicing factor, suppressor of white-apricot homolog isoform X1 [Jatropha curcas]
20 Hb_002928_190 0.1069485117 transcription factor TF Family: RWP-RK PREDICTED: protein NLP4 [Jatropha curcas]

Gene co-expression network

sample Hb_001488_040 Hb_001488_040 Hb_001862_110 Hb_001862_110 Hb_001488_040--Hb_001862_110 Hb_000699_210 Hb_000699_210 Hb_001488_040--Hb_000699_210 Hb_009486_160 Hb_009486_160 Hb_001488_040--Hb_009486_160 Hb_001427_150 Hb_001427_150 Hb_001488_040--Hb_001427_150 Hb_011249_060 Hb_011249_060 Hb_001488_040--Hb_011249_060 Hb_005765_040 Hb_005765_040 Hb_001488_040--Hb_005765_040 Hb_007054_040 Hb_007054_040 Hb_001862_110--Hb_007054_040 Hb_001541_250 Hb_001541_250 Hb_001862_110--Hb_001541_250 Hb_001862_110--Hb_009486_160 Hb_000926_150 Hb_000926_150 Hb_001862_110--Hb_000926_150 Hb_002812_010 Hb_002812_010 Hb_001862_110--Hb_002812_010 Hb_000699_210--Hb_009486_160 Hb_002387_040 Hb_002387_040 Hb_000699_210--Hb_002387_040 Hb_000638_280 Hb_000638_280 Hb_000699_210--Hb_000638_280 Hb_002897_050 Hb_002897_050 Hb_000699_210--Hb_002897_050 Hb_000796_120 Hb_000796_120 Hb_000699_210--Hb_000796_120 Hb_009486_160--Hb_011249_060 Hb_009486_160--Hb_002812_010 Hb_004319_070 Hb_004319_070 Hb_009486_160--Hb_004319_070 Hb_000363_120 Hb_000363_120 Hb_009486_160--Hb_000363_120 Hb_004899_040 Hb_004899_040 Hb_009486_160--Hb_004899_040 Hb_001427_150--Hb_011249_060 Hb_001427_150--Hb_004899_040 Hb_009302_030 Hb_009302_030 Hb_001427_150--Hb_009302_030 Hb_002928_190 Hb_002928_190 Hb_001427_150--Hb_002928_190 Hb_001427_150--Hb_005765_040 Hb_011249_060--Hb_009302_030 Hb_011249_060--Hb_004899_040 Hb_002903_140 Hb_002903_140 Hb_011249_060--Hb_002903_140 Hb_015183_100 Hb_015183_100 Hb_011249_060--Hb_015183_100 Hb_159295_010 Hb_159295_010 Hb_005765_040--Hb_159295_010 Hb_005765_040--Hb_011249_060 Hb_001341_160 Hb_001341_160 Hb_005765_040--Hb_001341_160 Hb_005765_040--Hb_009302_030 Hb_002918_320 Hb_002918_320 Hb_005765_040--Hb_002918_320 Hb_003604_050 Hb_003604_050 Hb_005765_040--Hb_003604_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.14524 15.7348 6.10542 4.70849 2.80932 2.62103
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.11201 3.48453 2.43677 6.73232 6.27865

CAGE analysis