Hb_001488_050

Information

Type transcription factor
Description TF Family: NAC
Location Contig1488: 49583-51261
Sequence    

Annotation

kegg
ID rcu:RCOM_0525590
description NAC domain-containing protein, putative
nr
ID XP_012076157.1
description PREDICTED: NAC transcription factor 29-like [Jatropha curcas]
swissprot
ID Q7GCL7
description NAC domain-containing protein 74 OS=Oryza sativa subsp. japonica GN=NAC74 PE=2 SV=1
trembl
ID R4N7R2
description NAC transcription factor 052 OS=Jatropha curcas GN=JCGZ_12782 PE=4 SV=1
Gene Ontology
ID GO:0009987
description nac domain-containing protein 86-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001488_050 0.0 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 29-like [Jatropha curcas]
2 Hb_002495_020 0.0238694565 - - hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis]
3 Hb_000046_130 0.0862329585 - - Peroxidase 27 precursor, putative [Ricinus communis]
4 Hb_002240_030 0.0902636138 - - -
5 Hb_020805_020 0.099736017 - - -
6 Hb_001433_010 0.1029206959 - - -
7 Hb_002392_060 0.1309408639 - - gag/pol protein [Bryonia dioica]
8 Hb_002928_080 0.1315783616 - - PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]
9 Hb_100821_010 0.1368035036 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
10 Hb_000757_080 0.1485139253 - - vacuolar ATP synthase subunit G plant, putative [Ricinus communis]
11 Hb_181132_010 0.1519676104 - - -
12 Hb_003878_160 0.1662934792 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008948_030 0.170277304 - - hypothetical protein RCOM_0224470 [Ricinus communis]
14 Hb_003589_010 0.172419199 - - -
15 Hb_155103_010 0.1757310429 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
16 Hb_003102_040 0.1833593212 - - PREDICTED: AT-hook motif nuclear-localized protein 23-like isoform X1 [Jatropha curcas]
17 Hb_047735_010 0.2296916113 - - DNA/RNA polymerases superfamily protein, putative [Theobroma cacao]
18 Hb_001948_010 0.2526355051 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
19 Hb_000733_110 0.2571248832 - - hypothetical protein JCGZ_01360 [Jatropha curcas]
20 Hb_008071_030 0.2922199741 - - -

Gene co-expression network

sample Hb_001488_050 Hb_001488_050 Hb_002495_020 Hb_002495_020 Hb_001488_050--Hb_002495_020 Hb_000046_130 Hb_000046_130 Hb_001488_050--Hb_000046_130 Hb_002240_030 Hb_002240_030 Hb_001488_050--Hb_002240_030 Hb_020805_020 Hb_020805_020 Hb_001488_050--Hb_020805_020 Hb_001433_010 Hb_001433_010 Hb_001488_050--Hb_001433_010 Hb_002392_060 Hb_002392_060 Hb_001488_050--Hb_002392_060 Hb_002495_020--Hb_000046_130 Hb_002495_020--Hb_002240_030 Hb_002495_020--Hb_020805_020 Hb_002495_020--Hb_001433_010 Hb_002495_020--Hb_002392_060 Hb_000046_130--Hb_002240_030 Hb_000046_130--Hb_020805_020 Hb_000046_130--Hb_001433_010 Hb_000046_130--Hb_002392_060 Hb_002928_080 Hb_002928_080 Hb_000046_130--Hb_002928_080 Hb_100821_010 Hb_100821_010 Hb_000046_130--Hb_100821_010 Hb_002240_030--Hb_020805_020 Hb_002240_030--Hb_001433_010 Hb_002240_030--Hb_002392_060 Hb_002240_030--Hb_002928_080 Hb_002240_030--Hb_100821_010 Hb_020805_020--Hb_001433_010 Hb_020805_020--Hb_002392_060 Hb_020805_020--Hb_002928_080 Hb_020805_020--Hb_100821_010 Hb_001433_010--Hb_002392_060 Hb_001433_010--Hb_002928_080 Hb_001433_010--Hb_100821_010 Hb_002392_060--Hb_002928_080 Hb_002392_060--Hb_100821_010 Hb_000757_080 Hb_000757_080 Hb_002392_060--Hb_000757_080 Hb_181132_010 Hb_181132_010 Hb_002392_060--Hb_181132_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0723184 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0267551 0

CAGE analysis