Hb_001488_070

Information

Type -
Description -
Location Contig1488: 63076-63825
Sequence    

Annotation

kegg
ID rcu:RCOM_0525640
description hypothetical protein
nr
ID XP_002526106.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FL82
description F-box protein At5g39250 OS=Arabidopsis thaliana GN=At5g39250 PE=2 SV=1
trembl
ID B9SJD7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0525640 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12284: 62734-65250 , PASA_asmbl_12294: 64777-64904
cDNA
(Sanger)
(ID:Location)		 027_O22.ab1: 63244-65246

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001488_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002813_040 0.0643121344 - - PREDICTED: PRA1 family protein G2 [Jatropha curcas]
3 Hb_000512_060 0.0759522383 - - PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Jatropha curcas]
4 Hb_000175_460 0.078019599 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
5 Hb_031527_040 0.0792457776 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
6 Hb_005686_060 0.0839862964 - - PREDICTED: uncharacterized protein LOC101508199 [Cicer arietinum]
7 Hb_000510_320 0.0865686235 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
8 Hb_001301_160 0.0877055945 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
9 Hb_004738_100 0.0877222076 - - PREDICTED: 14-3-3-like protein D-like isoform X1 [Citrus sinensis]
10 Hb_008725_260 0.0881965248 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
11 Hb_003092_040 0.0896659281 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
12 Hb_002105_040 0.0902203071 - - -
13 Hb_001242_060 0.0906592773 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
14 Hb_029866_090 0.0907687666 - - PREDICTED: uncharacterized protein LOC105648377 [Jatropha curcas]
15 Hb_020956_020 0.0917126736 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
16 Hb_002301_140 0.0919698573 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
17 Hb_000230_120 0.0924517875 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
18 Hb_000510_130 0.0927903649 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
19 Hb_000988_080 0.0929585859 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_000008_470 0.0937085122 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001488_070 Hb_001488_070 Hb_002813_040 Hb_002813_040 Hb_001488_070--Hb_002813_040 Hb_000512_060 Hb_000512_060 Hb_001488_070--Hb_000512_060 Hb_000175_460 Hb_000175_460 Hb_001488_070--Hb_000175_460 Hb_031527_040 Hb_031527_040 Hb_001488_070--Hb_031527_040 Hb_005686_060 Hb_005686_060 Hb_001488_070--Hb_005686_060 Hb_000510_320 Hb_000510_320 Hb_001488_070--Hb_000510_320 Hb_003581_070 Hb_003581_070 Hb_002813_040--Hb_003581_070 Hb_029866_090 Hb_029866_090 Hb_002813_040--Hb_029866_090 Hb_002813_040--Hb_031527_040 Hb_002256_030 Hb_002256_030 Hb_002813_040--Hb_002256_030 Hb_020956_020 Hb_020956_020 Hb_002813_040--Hb_020956_020 Hb_000181_070 Hb_000181_070 Hb_000512_060--Hb_000181_070 Hb_002105_040 Hb_002105_040 Hb_000512_060--Hb_002105_040 Hb_000230_120 Hb_000230_120 Hb_000512_060--Hb_000230_120 Hb_009178_030 Hb_009178_030 Hb_000512_060--Hb_009178_030 Hb_000512_060--Hb_000175_460 Hb_000035_320 Hb_000035_320 Hb_000512_060--Hb_000035_320 Hb_003862_050 Hb_003862_050 Hb_000175_460--Hb_003862_050 Hb_000175_460--Hb_002105_040 Hb_000175_460--Hb_000510_320 Hb_032208_090 Hb_032208_090 Hb_000175_460--Hb_032208_090 Hb_003092_040 Hb_003092_040 Hb_000175_460--Hb_003092_040 Hb_000876_070 Hb_000876_070 Hb_000175_460--Hb_000876_070 Hb_001242_060 Hb_001242_060 Hb_031527_040--Hb_001242_060 Hb_000563_320 Hb_000563_320 Hb_031527_040--Hb_000563_320 Hb_000016_250 Hb_000016_250 Hb_031527_040--Hb_000016_250 Hb_007416_180 Hb_007416_180 Hb_031527_040--Hb_007416_180 Hb_000099_080 Hb_000099_080 Hb_031527_040--Hb_000099_080 Hb_001157_040 Hb_001157_040 Hb_031527_040--Hb_001157_040 Hb_004705_100 Hb_004705_100 Hb_005686_060--Hb_004705_100 Hb_000045_090 Hb_000045_090 Hb_005686_060--Hb_000045_090 Hb_010172_080 Hb_010172_080 Hb_005686_060--Hb_010172_080 Hb_009773_020 Hb_009773_020 Hb_005686_060--Hb_009773_020 Hb_000510_130 Hb_000510_130 Hb_005686_060--Hb_000510_130 Hb_002078_150 Hb_002078_150 Hb_005686_060--Hb_002078_150 Hb_000510_320--Hb_002105_040 Hb_000086_400 Hb_000086_400 Hb_000510_320--Hb_000086_400 Hb_004738_040 Hb_004738_040 Hb_000510_320--Hb_004738_040 Hb_000510_320--Hb_000876_070 Hb_181288_020 Hb_181288_020 Hb_000510_320--Hb_181288_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
108.438 78.8633 45.2581 73.6294 73.2212 95.5352
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
84.5538 138.627 135.314 46.9244 25.6091

CAGE analysis