Hb_001488_170

Information

Type -
Description -
Location Contig1488: 107157-108494
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12860g
description POPTRDRAFT_259386; hypothetical protein
nr
ID XP_012084856.1
description PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
swissprot
ID Q8W0W3
description Transcription initiation factor IIB OS=Oryza sativa subsp. japonica GN=TFIIB PE=1 SV=1
trembl
ID A0A067JTH1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19935 PE=4 SV=1
Gene Ontology
ID GO:0046872
description transcription initiation factor iib-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001488_170 0.0 - - PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
2 Hb_001645_080 0.0019982749 transcription factor TF Family: C2H2 palmate-like pentafoliata 1 transcription factor [Manihot esculenta]
3 Hb_005663_020 0.0025268001 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
4 Hb_000760_090 0.0034526346 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-6 [Vitis vinifera]
5 Hb_005065_090 0.0036939168 - - zinc/iron transporter, putative [Ricinus communis]
6 Hb_000053_140 0.0066031793 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001946_090 0.0087595078 - - -
8 Hb_010543_010 0.0098024389 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
9 Hb_000152_690 0.0125540355 - - PREDICTED: uncharacterized protein LOC105648869 [Jatropha curcas]
10 Hb_004092_020 0.0161790797 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 32 [Jatropha curcas]
11 Hb_002284_140 0.0165761462 - - hypothetical protein POPTR_0002s00800g [Populus trichocarpa]
12 Hb_102933_010 0.0177242319 - - Pectate lyase precursor, putative [Ricinus communis]
13 Hb_000556_210 0.021674416 - - hypothetical protein POPTR_0014s06640g [Populus trichocarpa]
14 Hb_003792_010 0.0232075907 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002106_020 0.0242601952 - - PREDICTED: gibberellic acid methyltransferase 2 [Vitis vinifera]
16 Hb_002254_020 0.0249556499 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein-like [Jatropha curcas]
17 Hb_183658_010 0.0272138308 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
18 Hb_001377_140 0.0274263978 - - hypothetical protein MIMGU_mgv1a016697mg [Erythranthe guttata]
19 Hb_151697_010 0.0283179297 - - clathrin assembly protein, putative [Ricinus communis]
20 Hb_009711_060 0.028579373 - - -

Gene co-expression network

sample Hb_001488_170 Hb_001488_170 Hb_001645_080 Hb_001645_080 Hb_001488_170--Hb_001645_080 Hb_005663_020 Hb_005663_020 Hb_001488_170--Hb_005663_020 Hb_000760_090 Hb_000760_090 Hb_001488_170--Hb_000760_090 Hb_005065_090 Hb_005065_090 Hb_001488_170--Hb_005065_090 Hb_000053_140 Hb_000053_140 Hb_001488_170--Hb_000053_140 Hb_001946_090 Hb_001946_090 Hb_001488_170--Hb_001946_090 Hb_001645_080--Hb_005663_020 Hb_001645_080--Hb_000053_140 Hb_001645_080--Hb_000760_090 Hb_001645_080--Hb_005065_090 Hb_001645_080--Hb_001946_090 Hb_005663_020--Hb_000053_140 Hb_005663_020--Hb_000760_090 Hb_005663_020--Hb_005065_090 Hb_005663_020--Hb_001946_090 Hb_000760_090--Hb_005065_090 Hb_000760_090--Hb_001946_090 Hb_010543_010 Hb_010543_010 Hb_000760_090--Hb_010543_010 Hb_005065_090--Hb_001946_090 Hb_005065_090--Hb_010543_010 Hb_004092_020 Hb_004092_020 Hb_000053_140--Hb_004092_020 Hb_002284_140 Hb_002284_140 Hb_000053_140--Hb_002284_140 Hb_000053_140--Hb_000760_090 Hb_001946_090--Hb_010543_010 Hb_000152_690 Hb_000152_690 Hb_001946_090--Hb_000152_690 Hb_102933_010 Hb_102933_010 Hb_001946_090--Hb_102933_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0879366 0.0741554 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis