Hb_001488_180

Information

Type -
Description -
Location Contig1488: 109728-117181
Sequence    

Annotation

kegg
ID cic:CICLE_v10010896mg
description hypothetical protein
nr
ID XP_012084815.1
description PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTP7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19936 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12303: 109706-113964 , PASA_asmbl_12304: 111773-112106 , PASA_asmbl_12305: 115463-115963 , PASA_asmbl_12306: 116029-117171
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001488_180 0.0 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
2 Hb_001473_110 0.0565005432 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
3 Hb_000028_130 0.0653364759 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
4 Hb_000479_070 0.0674648078 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
5 Hb_004204_010 0.0687582043 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
6 Hb_010712_050 0.0695594211 - - PREDICTED: protein ELC-like [Jatropha curcas]
7 Hb_000017_220 0.0700163295 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
8 Hb_005408_030 0.0703289172 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
9 Hb_005977_070 0.0735296759 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
10 Hb_000347_390 0.0763218012 - - PREDICTED: exportin-T [Jatropha curcas]
11 Hb_001635_120 0.0765002007 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
12 Hb_002157_080 0.0766813892 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
13 Hb_009150_020 0.076772561 - - PREDICTED: uncharacterized protein LOC105630583 [Jatropha curcas]
14 Hb_004705_020 0.0773053734 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
15 Hb_000069_470 0.0774896396 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
16 Hb_001648_020 0.0780528323 - - hypothetical protein POPTR_0007s07750g [Populus trichocarpa]
17 Hb_000024_040 0.0781974101 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
18 Hb_003768_050 0.0784789161 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
19 Hb_007441_160 0.0788448739 - - RNA binding protein, putative [Ricinus communis]
20 Hb_000640_040 0.0789574483 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001488_180 Hb_001488_180 Hb_001473_110 Hb_001473_110 Hb_001488_180--Hb_001473_110 Hb_000028_130 Hb_000028_130 Hb_001488_180--Hb_000028_130 Hb_000479_070 Hb_000479_070 Hb_001488_180--Hb_000479_070 Hb_004204_010 Hb_004204_010 Hb_001488_180--Hb_004204_010 Hb_010712_050 Hb_010712_050 Hb_001488_180--Hb_010712_050 Hb_000017_220 Hb_000017_220 Hb_001488_180--Hb_000017_220 Hb_001473_110--Hb_000479_070 Hb_001473_110--Hb_000028_130 Hb_001545_150 Hb_001545_150 Hb_001473_110--Hb_001545_150 Hb_000347_390 Hb_000347_390 Hb_001473_110--Hb_000347_390 Hb_000347_400 Hb_000347_400 Hb_001473_110--Hb_000347_400 Hb_031042_050 Hb_031042_050 Hb_000028_130--Hb_031042_050 Hb_001635_120 Hb_001635_120 Hb_000028_130--Hb_001635_120 Hb_000028_130--Hb_000017_220 Hb_001716_020 Hb_001716_020 Hb_000028_130--Hb_001716_020 Hb_003494_020 Hb_003494_020 Hb_000028_130--Hb_003494_020 Hb_000479_070--Hb_001545_150 Hb_003918_030 Hb_003918_030 Hb_000479_070--Hb_003918_030 Hb_000479_070--Hb_031042_050 Hb_001279_120 Hb_001279_120 Hb_000479_070--Hb_001279_120 Hb_005977_070 Hb_005977_070 Hb_004204_010--Hb_005977_070 Hb_005408_030 Hb_005408_030 Hb_004204_010--Hb_005408_030 Hb_004705_020 Hb_004705_020 Hb_004204_010--Hb_004705_020 Hb_009658_030 Hb_009658_030 Hb_004204_010--Hb_009658_030 Hb_011021_050 Hb_011021_050 Hb_004204_010--Hb_011021_050 Hb_003030_060 Hb_003030_060 Hb_010712_050--Hb_003030_060 Hb_012194_030 Hb_012194_030 Hb_010712_050--Hb_012194_030 Hb_000329_370 Hb_000329_370 Hb_010712_050--Hb_000329_370 Hb_002234_090 Hb_002234_090 Hb_010712_050--Hb_002234_090 Hb_001614_060 Hb_001614_060 Hb_010712_050--Hb_001614_060 Hb_003835_070 Hb_003835_070 Hb_010712_050--Hb_003835_070 Hb_000017_220--Hb_001635_120 Hb_000025_280 Hb_000025_280 Hb_000017_220--Hb_000025_280 Hb_000017_220--Hb_001473_110 Hb_000017_220--Hb_004705_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.84899 11.9924 5.40158 5.17902 3.89933 5.56625
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.17425 4.56372 6.184 6.2729 9.18187

CAGE analysis