Hb_001488_210

Information

Type -
Description -
Location Contig1488: 138561-147724
Sequence    

Annotation

kegg
ID rcu:RCOM_1024860
description hypothetical protein
nr
ID XP_012084823.1
description PREDICTED: protein RIK [Jatropha curcas]
swissprot
ID Q9LIA4
description Protein RIK OS=Arabidopsis thaliana GN=RIK PE=1 SV=2
trembl
ID A0A067JTH5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19940 PE=4 SV=1
Gene Ontology
ID GO:0003723
description protein rik isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12311: 140001-144844 , PASA_asmbl_12312: 138740-146790 , PASA_asmbl_12314: 146363-146630 , PASA_asmbl_12315: 141377-143353 , PASA_asmbl_12316: 145977-146291 , PASA_asmbl_12318: 146927-147619
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001488_210 0.0 - - PREDICTED: protein RIK [Jatropha curcas]
2 Hb_010775_010 0.0781760823 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
3 Hb_002553_010 0.094341563 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 2-like [Populus euphratica]
4 Hb_000300_250 0.096112494 - - polyribonucleotide nucleotidyltransferase, putative [Ricinus communis]
5 Hb_002686_410 0.0974191434 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like isoform X2 [Jatropha curcas]
6 Hb_003216_060 0.0974215434 - - PREDICTED: heat shock protein 83 [Jatropha curcas]
7 Hb_000453_230 0.098312088 - - PREDICTED: NO-associated protein 1, chloroplastic/mitochondrial [Jatropha curcas]
8 Hb_005885_030 0.0988081923 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
9 Hb_001205_180 0.0999673393 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
10 Hb_004800_130 0.1028351308 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
11 Hb_009178_010 0.1063539798 - - PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]
12 Hb_006794_020 0.1095739694 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
13 Hb_000866_080 0.1101040499 - - PREDICTED: signal peptide peptidase-like 4 isoform X1 [Jatropha curcas]
14 Hb_001133_090 0.1128497471 - - hypothetical protein POPTR_0012s02680g [Populus trichocarpa]
15 Hb_002259_110 0.1133221152 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
16 Hb_000030_140 0.1141115964 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
17 Hb_000836_540 0.1146771159 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
18 Hb_000260_760 0.1155485282 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
19 Hb_000796_120 0.1179872703 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
20 Hb_002809_160 0.1184861567 - - PREDICTED: protein FAM63A [Jatropha curcas]

Gene co-expression network

sample Hb_001488_210 Hb_001488_210 Hb_010775_010 Hb_010775_010 Hb_001488_210--Hb_010775_010 Hb_002553_010 Hb_002553_010 Hb_001488_210--Hb_002553_010 Hb_000300_250 Hb_000300_250 Hb_001488_210--Hb_000300_250 Hb_002686_410 Hb_002686_410 Hb_001488_210--Hb_002686_410 Hb_003216_060 Hb_003216_060 Hb_001488_210--Hb_003216_060 Hb_000453_230 Hb_000453_230 Hb_001488_210--Hb_000453_230 Hb_005885_030 Hb_005885_030 Hb_010775_010--Hb_005885_030 Hb_013358_060 Hb_013358_060 Hb_010775_010--Hb_013358_060 Hb_006794_020 Hb_006794_020 Hb_010775_010--Hb_006794_020 Hb_001133_090 Hb_001133_090 Hb_010775_010--Hb_001133_090 Hb_010775_010--Hb_002686_410 Hb_004800_130 Hb_004800_130 Hb_002553_010--Hb_004800_130 Hb_002259_110 Hb_002259_110 Hb_002553_010--Hb_002259_110 Hb_152910_010 Hb_152910_010 Hb_002553_010--Hb_152910_010 Hb_001205_180 Hb_001205_180 Hb_002553_010--Hb_001205_180 Hb_000856_300 Hb_000856_300 Hb_002553_010--Hb_000856_300 Hb_005539_040 Hb_005539_040 Hb_000300_250--Hb_005539_040 Hb_000866_080 Hb_000866_080 Hb_000300_250--Hb_000866_080 Hb_000086_050 Hb_000086_050 Hb_000300_250--Hb_000086_050 Hb_007576_230 Hb_007576_230 Hb_000300_250--Hb_007576_230 Hb_001221_090 Hb_001221_090 Hb_000300_250--Hb_001221_090 Hb_009449_090 Hb_009449_090 Hb_000300_250--Hb_009449_090 Hb_009178_010 Hb_009178_010 Hb_002686_410--Hb_009178_010 Hb_002686_410--Hb_005885_030 Hb_000270_700 Hb_000270_700 Hb_002686_410--Hb_000270_700 Hb_000034_110 Hb_000034_110 Hb_002686_410--Hb_000034_110 Hb_009158_060 Hb_009158_060 Hb_002686_410--Hb_009158_060 Hb_000030_140 Hb_000030_140 Hb_002686_410--Hb_000030_140 Hb_003216_060--Hb_002686_410 Hb_003216_060--Hb_010775_010 Hb_000260_760 Hb_000260_760 Hb_003216_060--Hb_000260_760 Hb_003216_060--Hb_006794_020 Hb_003216_060--Hb_013358_060 Hb_004837_020 Hb_004837_020 Hb_000453_230--Hb_004837_020 Hb_027380_210 Hb_027380_210 Hb_000453_230--Hb_027380_210 Hb_002447_050 Hb_002447_050 Hb_000453_230--Hb_002447_050 Hb_000665_150 Hb_000665_150 Hb_000453_230--Hb_000665_150 Hb_161549_010 Hb_161549_010 Hb_000453_230--Hb_161549_010 Hb_000836_540 Hb_000836_540 Hb_000453_230--Hb_000836_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.76788 24.7728 21.9874 9.90089 9.1041 6.49323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.91631 3.32154 1.10802 12.9675 16.0131

CAGE analysis