Hb_001488_220

Information

Type -
Description -
Location Contig1488: 149800-152540
Sequence    

Annotation

kegg
ID rcu:RCOM_1025070
description protein binding protein, putative
nr
ID XP_012084824.1
description PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
swissprot
ID Q9FGH9
description Exocyst complex component EXO70B1 OS=Arabidopsis thaliana GN=EXO70B1 PE=1 SV=1
trembl
ID A0A067JTQ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19941 PE=4 SV=1
Gene Ontology
ID GO:0000145
description exocyst complex component exo70b1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12319: 149579-152488
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001488_220 0.0 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
2 Hb_001552_030 0.0661550383 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
3 Hb_008511_020 0.0775516029 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
4 Hb_002784_030 0.079279449 - - hypothetical protein POPTR_0001s06740g [Populus trichocarpa]
5 Hb_007445_010 0.0809768543 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
6 Hb_000238_030 0.0846222422 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_001789_030 0.0876573265 - - PREDICTED: signal peptide peptidase-like 1 [Jatropha curcas]
8 Hb_102698_010 0.0887285 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
9 Hb_002391_290 0.0902244251 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
10 Hb_001821_150 0.0925719657 - - PREDICTED: potassium transporter 7-like [Jatropha curcas]
11 Hb_000062_020 0.0938495223 - - ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_121089_030 0.0948510106 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
13 Hb_000001_170 0.0953785765 - - amino acid transporter, putative [Ricinus communis]
14 Hb_000099_030 0.0959112753 - - 6-phosphogluconate dehydrogenase, putative [Ricinus communis]
15 Hb_000252_050 0.0960335343 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
16 Hb_159809_030 0.0966552483 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 2-like isoform X2 [Jatropha curcas]
17 Hb_000679_270 0.0967111946 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
18 Hb_000049_020 0.0978469347 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
19 Hb_001442_060 0.09807766 - - PREDICTED: uncharacterized protein LOC105638091 isoform X1 [Jatropha curcas]
20 Hb_009569_040 0.0995098612 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]

Gene co-expression network

sample Hb_001488_220 Hb_001488_220 Hb_001552_030 Hb_001552_030 Hb_001488_220--Hb_001552_030 Hb_008511_020 Hb_008511_020 Hb_001488_220--Hb_008511_020 Hb_002784_030 Hb_002784_030 Hb_001488_220--Hb_002784_030 Hb_007445_010 Hb_007445_010 Hb_001488_220--Hb_007445_010 Hb_000238_030 Hb_000238_030 Hb_001488_220--Hb_000238_030 Hb_001789_030 Hb_001789_030 Hb_001488_220--Hb_001789_030 Hb_000017_230 Hb_000017_230 Hb_001552_030--Hb_000017_230 Hb_001085_290 Hb_001085_290 Hb_001552_030--Hb_001085_290 Hb_004109_370 Hb_004109_370 Hb_001552_030--Hb_004109_370 Hb_001552_030--Hb_002784_030 Hb_121089_030 Hb_121089_030 Hb_001552_030--Hb_121089_030 Hb_002675_030 Hb_002675_030 Hb_008511_020--Hb_002675_030 Hb_001440_020 Hb_001440_020 Hb_008511_020--Hb_001440_020 Hb_002027_080 Hb_002027_080 Hb_008511_020--Hb_002027_080 Hb_001518_080 Hb_001518_080 Hb_008511_020--Hb_001518_080 Hb_000049_020 Hb_000049_020 Hb_008511_020--Hb_000049_020 Hb_000345_160 Hb_000345_160 Hb_008511_020--Hb_000345_160 Hb_000640_070 Hb_000640_070 Hb_002784_030--Hb_000640_070 Hb_012215_010 Hb_012215_010 Hb_002784_030--Hb_012215_010 Hb_008397_010 Hb_008397_010 Hb_002784_030--Hb_008397_010 Hb_002475_040 Hb_002475_040 Hb_002784_030--Hb_002475_040 Hb_073973_150 Hb_073973_150 Hb_002784_030--Hb_073973_150 Hb_001511_240 Hb_001511_240 Hb_007445_010--Hb_001511_240 Hb_102698_010 Hb_102698_010 Hb_007445_010--Hb_102698_010 Hb_001442_060 Hb_001442_060 Hb_007445_010--Hb_001442_060 Hb_000099_030 Hb_000099_030 Hb_007445_010--Hb_000099_030 Hb_007445_010--Hb_000238_030 Hb_000238_030--Hb_001442_060 Hb_000258_110 Hb_000258_110 Hb_000238_030--Hb_000258_110 Hb_000001_170 Hb_000001_170 Hb_000238_030--Hb_000001_170 Hb_000238_030--Hb_102698_010 Hb_012733_070 Hb_012733_070 Hb_000238_030--Hb_012733_070 Hb_086063_020 Hb_086063_020 Hb_000238_030--Hb_086063_020 Hb_000163_090 Hb_000163_090 Hb_001789_030--Hb_000163_090 Hb_000352_300 Hb_000352_300 Hb_001789_030--Hb_000352_300 Hb_000184_070 Hb_000184_070 Hb_001789_030--Hb_000184_070 Hb_000637_150 Hb_000637_150 Hb_001789_030--Hb_000637_150 Hb_001584_140 Hb_001584_140 Hb_001789_030--Hb_001584_140 Hb_001009_320 Hb_001009_320 Hb_001789_030--Hb_001009_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.17237 6.68276 6.50306 14.1098 6.36902 8.76134
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.77007 2.62891 5.1763 9.83013 9.73594

CAGE analysis