Hb_001488_250

Information

Type -
Description -
Location Contig1488: 167591-168591
Sequence    

Annotation

kegg
ID rcu:RCOM_1025300
description hypothetical protein
nr
ID XP_002527616.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SNP7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1025300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001488_250 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_023344_090 0.0764417353 - - Photosystem II reaction center W protein, putative [Ricinus communis]
3 Hb_000128_040 0.0880550445 - - PREDICTED: uncharacterized protein LOC105641228 isoform X1 [Jatropha curcas]
4 Hb_005000_110 0.0900147079 - - PREDICTED: uncharacterized protein LOC105637872 isoform X1 [Jatropha curcas]
5 Hb_001343_030 0.09344755 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas]
6 Hb_000719_030 0.0965061402 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
7 Hb_146225_020 0.0988307579 - - chlorophyll A/B binding protein, putative [Ricinus communis]
8 Hb_013726_060 0.100074485 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
9 Hb_001675_090 0.1030332024 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
10 Hb_001014_240 0.1030964492 - - PREDICTED: protein NRT1/ PTR FAMILY 6.1 [Jatropha curcas]
11 Hb_008195_070 0.1053007343 - - PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_000510_180 0.1059083015 - - unknown [Lotus japonicus]
13 Hb_002272_210 0.1068251479 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
14 Hb_005345_020 0.1078027111 - - Root phototropism protein, putative [Ricinus communis]
15 Hb_001975_120 0.1081334716 - - chlorophyll a/b binding protein type II [Glycine max]
16 Hb_004920_020 0.1090483735 - - hypothetical protein POPTR_0014s11700g [Populus trichocarpa]
17 Hb_009193_020 0.1104406203 - - PREDICTED: epoxide hydrolase 3 [Jatropha curcas]
18 Hb_003120_020 0.1111698855 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 13-like [Prunus mume]
19 Hb_000808_130 0.111283788 - - 3-5 exonuclease, putative [Ricinus communis]
20 Hb_001135_310 0.1124021771 - - Chlorophyll a-b binding protein 6A [Morus notabilis]

Gene co-expression network

sample Hb_001488_250 Hb_001488_250 Hb_023344_090 Hb_023344_090 Hb_001488_250--Hb_023344_090 Hb_000128_040 Hb_000128_040 Hb_001488_250--Hb_000128_040 Hb_005000_110 Hb_005000_110 Hb_001488_250--Hb_005000_110 Hb_001343_030 Hb_001343_030 Hb_001488_250--Hb_001343_030 Hb_000719_030 Hb_000719_030 Hb_001488_250--Hb_000719_030 Hb_146225_020 Hb_146225_020 Hb_001488_250--Hb_146225_020 Hb_023344_090--Hb_000128_040 Hb_023344_090--Hb_005000_110 Hb_000808_130 Hb_000808_130 Hb_023344_090--Hb_000808_130 Hb_023344_090--Hb_001343_030 Hb_000116_320 Hb_000116_320 Hb_023344_090--Hb_000116_320 Hb_001014_240 Hb_001014_240 Hb_000128_040--Hb_001014_240 Hb_015044_010 Hb_015044_010 Hb_000128_040--Hb_015044_010 Hb_101133_030 Hb_101133_030 Hb_000128_040--Hb_101133_030 Hb_000359_050 Hb_000359_050 Hb_000128_040--Hb_000359_050 Hb_006267_040 Hb_006267_040 Hb_000128_040--Hb_006267_040 Hb_005000_110--Hb_001343_030 Hb_007597_030 Hb_007597_030 Hb_005000_110--Hb_007597_030 Hb_005000_110--Hb_000808_130 Hb_000962_090 Hb_000962_090 Hb_005000_110--Hb_000962_090 Hb_001343_030--Hb_000962_090 Hb_001975_120 Hb_001975_120 Hb_001343_030--Hb_001975_120 Hb_002272_210 Hb_002272_210 Hb_001343_030--Hb_002272_210 Hb_000530_040 Hb_000530_040 Hb_001343_030--Hb_000530_040 Hb_005211_080 Hb_005211_080 Hb_001343_030--Hb_005211_080 Hb_001343_030--Hb_000359_050 Hb_000719_030--Hb_146225_020 Hb_001135_310 Hb_001135_310 Hb_000719_030--Hb_001135_310 Hb_001675_090 Hb_001675_090 Hb_000719_030--Hb_001675_090 Hb_002818_110 Hb_002818_110 Hb_000719_030--Hb_002818_110 Hb_013726_060 Hb_013726_060 Hb_000719_030--Hb_013726_060 Hb_001571_100 Hb_001571_100 Hb_000719_030--Hb_001571_100 Hb_146225_020--Hb_001135_310 Hb_146225_020--Hb_013726_060 Hb_146225_020--Hb_001675_090 Hb_000531_100 Hb_000531_100 Hb_146225_020--Hb_000531_100 Hb_146225_020--Hb_001571_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0460558 1.24096 0.422625 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0451369 0 0.0363973 1.37458

CAGE analysis