Hb_001488_290

Information

Type -
Description -
Location Contig1488: 190684-196776
Sequence    

Annotation

kegg
ID rcu:RCOM_1025530
description Ras-GTPase-activating protein-binding protein, putative
nr
ID XP_002527619.1
description Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
swissprot
ID O94260
description Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1
trembl
ID B9SNQ0
description Ras-GTPase-activating protein-binding protein, putative OS=Ricinus communis GN=RCOM_1025530 PE=4 SV=1
Gene Ontology
ID GO:0005622
description g3bp-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12324: 196696-196808
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001488_290 0.0 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
2 Hb_002876_200 0.0738077876 - - PREDICTED: uncharacterized protein LOC105641209 isoform X1 [Jatropha curcas]
3 Hb_000086_180 0.0996677752 - - hypothetical protein JCGZ_17674 [Jatropha curcas]
4 Hb_004586_040 0.1002637584 transcription factor TF Family: MIKC K-box region and MADS-box transcription factor family protein [Theobroma cacao]
5 Hb_050847_040 0.1137100056 - - PREDICTED: uncharacterized protein LOC105649141 [Jatropha curcas]
6 Hb_002999_030 0.1302145809 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
7 Hb_001141_050 0.1422755341 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
8 Hb_000032_410 0.1423401223 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
9 Hb_005000_010 0.1435346136 - - PREDICTED: K(+) efflux antiporter 4 isoform X1 [Jatropha curcas]
10 Hb_004545_080 0.1463927901 - - protein with unknown function [Ricinus communis]
11 Hb_000968_060 0.1481480316 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
12 Hb_000274_050 0.1504109584 - - Squalene monooxygenase, putative [Ricinus communis]
13 Hb_000890_020 0.1512251828 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
14 Hb_004330_020 0.1544772944 - - PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
15 Hb_001123_310 0.1547567935 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
16 Hb_001160_110 0.1551421206 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
17 Hb_002965_160 0.1560911446 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
18 Hb_002488_010 0.1569770031 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
19 Hb_000008_390 0.1572590832 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
20 Hb_000649_330 0.1581603746 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]

Gene co-expression network

sample Hb_001488_290 Hb_001488_290 Hb_002876_200 Hb_002876_200 Hb_001488_290--Hb_002876_200 Hb_000086_180 Hb_000086_180 Hb_001488_290--Hb_000086_180 Hb_004586_040 Hb_004586_040 Hb_001488_290--Hb_004586_040 Hb_050847_040 Hb_050847_040 Hb_001488_290--Hb_050847_040 Hb_002999_030 Hb_002999_030 Hb_001488_290--Hb_002999_030 Hb_001141_050 Hb_001141_050 Hb_001488_290--Hb_001141_050 Hb_002876_200--Hb_004586_040 Hb_002876_200--Hb_050847_040 Hb_000274_050 Hb_000274_050 Hb_002876_200--Hb_000274_050 Hb_005000_010 Hb_005000_010 Hb_002876_200--Hb_005000_010 Hb_002876_200--Hb_000086_180 Hb_000008_390 Hb_000008_390 Hb_000086_180--Hb_000008_390 Hb_001160_110 Hb_001160_110 Hb_000086_180--Hb_001160_110 Hb_000032_410 Hb_000032_410 Hb_000086_180--Hb_000032_410 Hb_001663_130 Hb_001663_130 Hb_000086_180--Hb_001663_130 Hb_000649_330 Hb_000649_330 Hb_000086_180--Hb_000649_330 Hb_003688_010 Hb_003688_010 Hb_004586_040--Hb_003688_010 Hb_000544_200 Hb_000544_200 Hb_004586_040--Hb_000544_200 Hb_000076_250 Hb_000076_250 Hb_004586_040--Hb_000076_250 Hb_000483_080 Hb_000483_080 Hb_004586_040--Hb_000483_080 Hb_004330_020 Hb_004330_020 Hb_050847_040--Hb_004330_020 Hb_001439_210 Hb_001439_210 Hb_050847_040--Hb_001439_210 Hb_004545_080 Hb_004545_080 Hb_050847_040--Hb_004545_080 Hb_000200_330 Hb_000200_330 Hb_050847_040--Hb_000200_330 Hb_003894_060 Hb_003894_060 Hb_050847_040--Hb_003894_060 Hb_001689_050 Hb_001689_050 Hb_002999_030--Hb_001689_050 Hb_002999_030--Hb_000086_180 Hb_004052_070 Hb_004052_070 Hb_002999_030--Hb_004052_070 Hb_003683_030 Hb_003683_030 Hb_002999_030--Hb_003683_030 Hb_000749_200 Hb_000749_200 Hb_002999_030--Hb_000749_200 Hb_001922_110 Hb_001922_110 Hb_001141_050--Hb_001922_110 Hb_001141_050--Hb_000032_410 Hb_000032_200 Hb_000032_200 Hb_001141_050--Hb_000032_200 Hb_006133_020 Hb_006133_020 Hb_001141_050--Hb_006133_020 Hb_001141_050--Hb_000076_250 Hb_003640_050 Hb_003640_050 Hb_001141_050--Hb_003640_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.384619 0.819559 5.08653 3.06866 0.792905 0.69087
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.136549 0.0537111 0.251501 0.987305 1.62382

CAGE analysis