Hb_001488_330

Information

Type -
Description -
Location Contig1488: 265978-267120
Sequence    

Annotation

kegg
ID rcu:RCOM_1027050
description tbp-associated factor taf, putative
nr
ID XP_012084836.1
description PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
swissprot
ID Q9SYZ9
description Transcription initiation factor TFIID subunit 8 OS=Arabidopsis thaliana GN=TAF8 PE=1 SV=1
trembl
ID A0A067K645
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19958 PE=4 SV=1
Gene Ontology
ID GO:0005488
description transcription initiation factor tfiid subunit 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001488_330 0.0 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
2 Hb_006332_020 0.0709307058 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
3 Hb_000977_070 0.0757125515 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
4 Hb_000022_250 0.07850982 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]
5 Hb_000554_020 0.0824126384 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
6 Hb_000032_290 0.0830426805 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
7 Hb_004600_040 0.0873269957 - - -
8 Hb_004195_160 0.0896891253 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
9 Hb_001959_080 0.0903670597 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000421_260 0.0909016165 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
11 Hb_000787_110 0.0917262384 - - eukaryotic translation initiation factor 2 [Hevea brasiliensis]
12 Hb_001019_230 0.0942419544 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070 [Jatropha curcas]
13 Hb_000123_260 0.0943980804 - - PREDICTED: protein gar2 [Jatropha curcas]
14 Hb_001736_040 0.0944856544 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
15 Hb_000155_190 0.0945085473 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002810_020 0.0946950095 - - PREDICTED: pentatricopeptide repeat-containing protein At1g25360 [Jatropha curcas]
17 Hb_000538_200 0.0948508732 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Jatropha curcas]
18 Hb_000661_050 0.095167444 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
19 Hb_002375_020 0.0958185202 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
20 Hb_000406_220 0.0962512189 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]

Gene co-expression network

sample Hb_001488_330 Hb_001488_330 Hb_006332_020 Hb_006332_020 Hb_001488_330--Hb_006332_020 Hb_000977_070 Hb_000977_070 Hb_001488_330--Hb_000977_070 Hb_000022_250 Hb_000022_250 Hb_001488_330--Hb_000022_250 Hb_000554_020 Hb_000554_020 Hb_001488_330--Hb_000554_020 Hb_000032_290 Hb_000032_290 Hb_001488_330--Hb_000032_290 Hb_004600_040 Hb_004600_040 Hb_001488_330--Hb_004600_040 Hb_000398_180 Hb_000398_180 Hb_006332_020--Hb_000398_180 Hb_004195_160 Hb_004195_160 Hb_006332_020--Hb_004195_160 Hb_028872_140 Hb_028872_140 Hb_006332_020--Hb_028872_140 Hb_001571_040 Hb_001571_040 Hb_006332_020--Hb_001571_040 Hb_001226_160 Hb_001226_160 Hb_006332_020--Hb_001226_160 Hb_002876_110 Hb_002876_110 Hb_006332_020--Hb_002876_110 Hb_001736_040 Hb_001736_040 Hb_000977_070--Hb_001736_040 Hb_001141_330 Hb_001141_330 Hb_000977_070--Hb_001141_330 Hb_000827_070 Hb_000827_070 Hb_000977_070--Hb_000827_070 Hb_000152_820 Hb_000152_820 Hb_000977_070--Hb_000152_820 Hb_000317_020 Hb_000317_020 Hb_000977_070--Hb_000317_020 Hb_002810_020 Hb_002810_020 Hb_000022_250--Hb_002810_020 Hb_007951_050 Hb_007951_050 Hb_000022_250--Hb_007951_050 Hb_000022_250--Hb_000554_020 Hb_001159_100 Hb_001159_100 Hb_000022_250--Hb_001159_100 Hb_010172_050 Hb_010172_050 Hb_000022_250--Hb_010172_050 Hb_000406_220 Hb_000406_220 Hb_000554_020--Hb_000406_220 Hb_000554_020--Hb_006332_020 Hb_000754_060 Hb_000754_060 Hb_000554_020--Hb_000754_060 Hb_001671_020 Hb_001671_020 Hb_000554_020--Hb_001671_020 Hb_000554_020--Hb_028872_140 Hb_000554_020--Hb_000032_290 Hb_000245_130 Hb_000245_130 Hb_000032_290--Hb_000245_130 Hb_000032_290--Hb_000406_220 Hb_018838_030 Hb_018838_030 Hb_000032_290--Hb_018838_030 Hb_181235_010 Hb_181235_010 Hb_000032_290--Hb_181235_010 Hb_000032_290--Hb_006332_020 Hb_004600_040--Hb_002876_110 Hb_000538_200 Hb_000538_200 Hb_004600_040--Hb_000538_200 Hb_000123_260 Hb_000123_260 Hb_004600_040--Hb_000123_260 Hb_000421_260 Hb_000421_260 Hb_004600_040--Hb_000421_260 Hb_003097_150 Hb_003097_150 Hb_004600_040--Hb_003097_150 Hb_004600_040--Hb_000317_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.1234 11.0368 3.08372 6.00606 16.8665 23.3828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.6895 23.2109 18.018 6.28139 7.9603

CAGE analysis