Hb_001488_340

Information

Type -
Description -
Location Contig1488: 268660-272946
Sequence    

Annotation

kegg
ID rcu:RCOM_1027070
description hypothetical protein
nr
ID XP_012084865.1
description PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
swissprot
ID Q9LF24
description Protein LONGIFOLIA 1 OS=Arabidopsis thaliana GN=LNG1 PE=1 SV=1
trembl
ID B9SNR4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1027070 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12331: 268456-273054 , PASA_asmbl_12332: 269544-269905 , PASA_asmbl_12333: 273231-273660
cDNA
(Sanger)
(ID:Location)		 036_C22.ab1: 269127-270312 , 036_O11.ab1: 269147-270312

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001488_340 0.0 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
2 Hb_005085_020 0.1203326466 - - hypothetical protein B456_001G193200 [Gossypium raimondii]
3 Hb_074449_010 0.1302034188 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
4 Hb_001882_040 0.1351698554 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
5 Hb_000270_870 0.1433412365 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
6 Hb_001141_410 0.1443942315 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
7 Hb_000198_070 0.1472120854 - - PREDICTED: cyclin-dependent kinase inhibitor 7-like [Jatropha curcas]
8 Hb_033642_100 0.1476490285 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Prunus mume]
9 Hb_002769_020 0.1495339637 - - DNA-damage-inducible protein f, putative [Ricinus communis]
10 Hb_000031_280 0.1496203713 - - -
11 Hb_001085_250 0.1644572455 transcription factor TF Family: G2-like PREDICTED: myb family transcription factor APL isoform X2 [Jatropha curcas]
12 Hb_001863_260 0.1651409961 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_000203_230 0.1662516808 - - PREDICTED: probable inactive dual specificity protein phosphatase-like At4g18593 [Jatropha curcas]
14 Hb_008556_030 0.1691744071 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
15 Hb_001163_120 0.1693974264 - - WD-repeat protein, putative [Ricinus communis]
16 Hb_002942_060 0.1700710388 - - RNA-binding protein, putative [Ricinus communis]
17 Hb_000416_050 0.1717721145 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 2 protein, putative [Ricinus communis]
18 Hb_001396_280 0.1720537029 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
19 Hb_003376_050 0.172145701 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
20 Hb_135377_010 0.1727152454 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like, partial [Jatropha curcas]

Gene co-expression network

sample Hb_001488_340 Hb_001488_340 Hb_005085_020 Hb_005085_020 Hb_001488_340--Hb_005085_020 Hb_074449_010 Hb_074449_010 Hb_001488_340--Hb_074449_010 Hb_001882_040 Hb_001882_040 Hb_001488_340--Hb_001882_040 Hb_000270_870 Hb_000270_870 Hb_001488_340--Hb_000270_870 Hb_001141_410 Hb_001141_410 Hb_001488_340--Hb_001141_410 Hb_000198_070 Hb_000198_070 Hb_001488_340--Hb_000198_070 Hb_000976_260 Hb_000976_260 Hb_005085_020--Hb_000976_260 Hb_001142_050 Hb_001142_050 Hb_005085_020--Hb_001142_050 Hb_011013_010 Hb_011013_010 Hb_005085_020--Hb_011013_010 Hb_000012_020 Hb_000012_020 Hb_005085_020--Hb_000012_020 Hb_001910_020 Hb_001910_020 Hb_005085_020--Hb_001910_020 Hb_002804_020 Hb_002804_020 Hb_074449_010--Hb_002804_020 Hb_161478_010 Hb_161478_010 Hb_074449_010--Hb_161478_010 Hb_010883_140 Hb_010883_140 Hb_074449_010--Hb_010883_140 Hb_002541_020 Hb_002541_020 Hb_074449_010--Hb_002541_020 Hb_074449_010--Hb_000270_870 Hb_011609_170 Hb_011609_170 Hb_001882_040--Hb_011609_170 Hb_001882_040--Hb_001910_020 Hb_001163_120 Hb_001163_120 Hb_001882_040--Hb_001163_120 Hb_035318_010 Hb_035318_010 Hb_001882_040--Hb_035318_010 Hb_000031_280 Hb_000031_280 Hb_001882_040--Hb_000031_280 Hb_000336_270 Hb_000336_270 Hb_001882_040--Hb_000336_270 Hb_000270_870--Hb_002804_020 Hb_003872_010 Hb_003872_010 Hb_000270_870--Hb_003872_010 Hb_001776_030 Hb_001776_030 Hb_000270_870--Hb_001776_030 Hb_008511_060 Hb_008511_060 Hb_000270_870--Hb_008511_060 Hb_010053_040 Hb_010053_040 Hb_000270_870--Hb_010053_040 Hb_002769_020 Hb_002769_020 Hb_001141_410--Hb_002769_020 Hb_000203_230 Hb_000203_230 Hb_001141_410--Hb_000203_230 Hb_004375_130 Hb_004375_130 Hb_001141_410--Hb_004375_130 Hb_000700_150 Hb_000700_150 Hb_001141_410--Hb_000700_150 Hb_001141_410--Hb_074449_010 Hb_000606_080 Hb_000606_080 Hb_000198_070--Hb_000606_080 Hb_012132_040 Hb_012132_040 Hb_000198_070--Hb_012132_040 Hb_013691_020 Hb_013691_020 Hb_000198_070--Hb_013691_020 Hb_002067_020 Hb_002067_020 Hb_000198_070--Hb_002067_020 Hb_000364_080 Hb_000364_080 Hb_000198_070--Hb_000364_080 Hb_000523_090 Hb_000523_090 Hb_000198_070--Hb_000523_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0871 2.69065 6.834 6.34554 3.63853 10.6343
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.57696 2.4359 1.03692 1.20503 3.13642

CAGE analysis