Hb_001488_350

Information

Type -
Description -
Location Contig1488: 279631-282032
Sequence    

Annotation

kegg
ID rcu:RCOM_1027080
description hypothetical protein
nr
ID XP_002527634.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O94336
description Uncharacterized FCP1 homology domain-containing protein C1271.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1271.03c PE=3 SV=1
trembl
ID B9SNR5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1027080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12334: 279577-279735 , PASA_asmbl_12335: 279763-280589 , PASA_asmbl_12336: 281342-281887 , PASA_asmbl_12337: 282022-284520
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001488_350 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000181_220 0.1008261195 - - PREDICTED: MATE efflux family protein LAL5-like isoform X2 [Jatropha curcas]
3 Hb_004374_160 0.1093293735 transcription factor TF Family: bHLH hypothetical protein JCGZ_20587 [Jatropha curcas]
4 Hb_039435_010 0.1106801677 - - hypothetical protein SORBIDRAFT_10g025530 [Sorghum bicolor]
5 Hb_000416_090 0.1333625437 - - Aquaporin NIP1.1, putative [Ricinus communis]
6 Hb_000621_030 0.1346277306 - - PREDICTED: uncharacterized protein LOC105638736 isoform X1 [Jatropha curcas]
7 Hb_001278_090 0.1347993658 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
8 Hb_000140_500 0.1364152163 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_004116_050 0.1383273978 - - PREDICTED: cytochrome P450 90A1 [Jatropha curcas]
10 Hb_000347_100 0.1392114584 transcription factor TF Family: C3H hypothetical protein RCOM_0684740 [Ricinus communis]
11 Hb_006142_050 0.139809645 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
12 Hb_004881_070 0.1418185994 - - ATP binding protein, putative [Ricinus communis]
13 Hb_000057_100 0.1471591546 - - Peroxidase 57 precursor, putative [Ricinus communis]
14 Hb_007101_140 0.1474639836 - - hypothetical protein JCGZ_21777 [Jatropha curcas]
15 Hb_000337_030 0.148286988 - - amino acid transporter, putative [Ricinus communis]
16 Hb_006775_110 0.1496329553 - - PREDICTED: uncharacterized protein LOC105649734 [Jatropha curcas]
17 Hb_002817_050 0.1498245868 transcription factor TF Family: Orphans hypothetical protein POPTR_0004s16810g, partial [Populus trichocarpa]
18 Hb_002949_020 0.1518148682 transcription factor TF Family: bHLH hypothetical protein POPTR_0002s23650g [Populus trichocarpa]
19 Hb_001405_040 0.1523082844 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
20 Hb_029639_030 0.1523794434 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_001488_350 Hb_001488_350 Hb_000181_220 Hb_000181_220 Hb_001488_350--Hb_000181_220 Hb_004374_160 Hb_004374_160 Hb_001488_350--Hb_004374_160 Hb_039435_010 Hb_039435_010 Hb_001488_350--Hb_039435_010 Hb_000416_090 Hb_000416_090 Hb_001488_350--Hb_000416_090 Hb_000621_030 Hb_000621_030 Hb_001488_350--Hb_000621_030 Hb_001278_090 Hb_001278_090 Hb_001488_350--Hb_001278_090 Hb_029639_030 Hb_029639_030 Hb_000181_220--Hb_029639_030 Hb_033772_060 Hb_033772_060 Hb_000181_220--Hb_033772_060 Hb_007101_140 Hb_007101_140 Hb_000181_220--Hb_007101_140 Hb_007894_080 Hb_007894_080 Hb_000181_220--Hb_007894_080 Hb_001405_040 Hb_001405_040 Hb_000181_220--Hb_001405_040 Hb_004374_160--Hb_039435_010 Hb_004374_160--Hb_000621_030 Hb_004881_070 Hb_004881_070 Hb_004374_160--Hb_004881_070 Hb_002817_050 Hb_002817_050 Hb_004374_160--Hb_002817_050 Hb_005493_010 Hb_005493_010 Hb_004374_160--Hb_005493_010 Hb_024570_030 Hb_024570_030 Hb_039435_010--Hb_024570_030 Hb_004116_050 Hb_004116_050 Hb_039435_010--Hb_004116_050 Hb_119443_010 Hb_119443_010 Hb_039435_010--Hb_119443_010 Hb_001244_070 Hb_001244_070 Hb_039435_010--Hb_001244_070 Hb_000416_090--Hb_004116_050 Hb_000416_090--Hb_001405_040 Hb_000416_090--Hb_029639_030 Hb_000416_090--Hb_000181_220 Hb_019570_010 Hb_019570_010 Hb_000416_090--Hb_019570_010 Hb_000318_010 Hb_000318_010 Hb_000416_090--Hb_000318_010 Hb_002001_030 Hb_002001_030 Hb_000621_030--Hb_002001_030 Hb_000621_030--Hb_004881_070 Hb_162174_010 Hb_162174_010 Hb_000621_030--Hb_162174_010 Hb_010264_010 Hb_010264_010 Hb_000621_030--Hb_010264_010 Hb_000621_030--Hb_004116_050 Hb_001278_090--Hb_000181_220 Hb_000140_500 Hb_000140_500 Hb_001278_090--Hb_000140_500 Hb_030827_010 Hb_030827_010 Hb_001278_090--Hb_030827_010 Hb_001278_090--Hb_000416_090 Hb_002949_020 Hb_002949_020 Hb_001278_090--Hb_002949_020 Hb_000130_480 Hb_000130_480 Hb_001278_090--Hb_000130_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.136917 1.73437 1.88112 0 0.0340677
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0376081 0.177507 0 1.2548 2.2117

CAGE analysis