Hb_001488_410

Information

Type -
Description -
Location Contig1488: 326533-330677
Sequence    

Annotation

kegg
ID rcu:RCOM_0048870
description cop9 complex subunit 7a, putative
nr
ID XP_012084840.1
description PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
swissprot
ID Q54KZ8
description Eukaryotic translation initiation factor 3 subunit M OS=Dictyostelium discoideum GN=eif3m PE=1 SV=1
trembl
ID A0A067K648
description Eukaryotic translation initiation factor 3 subunit M OS=Jatropha curcas GN=JCGZ_19963 PE=3 SV=1
Gene Ontology
ID GO:0000502
description eukaryotic translation initiation factor 3 subunit m

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12345: 326644-330626
cDNA
(Sanger)
(ID:Location)		 006_O07.ab1: 326644-328806 , 023_P23.ab1: 326644-328210

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001488_410 0.0 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
2 Hb_004102_140 0.0585002679 - - conserved hypothetical protein [Ricinus communis]
3 Hb_020719_030 0.0586354105 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
4 Hb_003464_020 0.0612529808 - - srpk, putative [Ricinus communis]
5 Hb_000023_190 0.0648561717 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
6 Hb_006252_040 0.0670266975 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
7 Hb_033834_060 0.0674656908 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
8 Hb_004096_100 0.0680529532 - - PREDICTED: NADPH-dependent diflavin oxidoreductase 1 [Jatropha curcas]
9 Hb_103012_010 0.0682823019 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
10 Hb_030131_040 0.0715033442 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
11 Hb_010381_060 0.0715460722 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
12 Hb_001341_120 0.0734082772 - - hypothetical protein B456_001G130300 [Gossypium raimondii]
13 Hb_000470_070 0.0736332407 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
14 Hb_001444_010 0.0738517627 transcription factor TF Family: DDT PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1 [Jatropha curcas]
15 Hb_001541_090 0.0745689486 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
16 Hb_004994_040 0.0782307272 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
17 Hb_001617_060 0.0783710944 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
18 Hb_000208_210 0.0798616085 - - PREDICTED: RNA-binding protein Nova-2 [Jatropha curcas]
19 Hb_003966_030 0.0802233173 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]
20 Hb_016898_010 0.0803812342 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]

Gene co-expression network

sample Hb_001488_410 Hb_001488_410 Hb_004102_140 Hb_004102_140 Hb_001488_410--Hb_004102_140 Hb_020719_030 Hb_020719_030 Hb_001488_410--Hb_020719_030 Hb_003464_020 Hb_003464_020 Hb_001488_410--Hb_003464_020 Hb_000023_190 Hb_000023_190 Hb_001488_410--Hb_000023_190 Hb_006252_040 Hb_006252_040 Hb_001488_410--Hb_006252_040 Hb_033834_060 Hb_033834_060 Hb_001488_410--Hb_033834_060 Hb_003966_030 Hb_003966_030 Hb_004102_140--Hb_003966_030 Hb_001617_060 Hb_001617_060 Hb_004102_140--Hb_001617_060 Hb_003362_070 Hb_003362_070 Hb_004102_140--Hb_003362_070 Hb_000820_170 Hb_000820_170 Hb_004102_140--Hb_000820_170 Hb_004096_100 Hb_004096_100 Hb_004102_140--Hb_004096_100 Hb_002272_180 Hb_002272_180 Hb_020719_030--Hb_002272_180 Hb_020719_030--Hb_033834_060 Hb_004117_130 Hb_004117_130 Hb_020719_030--Hb_004117_130 Hb_000260_170 Hb_000260_170 Hb_020719_030--Hb_000260_170 Hb_103012_010 Hb_103012_010 Hb_020719_030--Hb_103012_010 Hb_003464_020--Hb_000023_190 Hb_010381_060 Hb_010381_060 Hb_003464_020--Hb_010381_060 Hb_021409_170 Hb_021409_170 Hb_003464_020--Hb_021409_170 Hb_000567_050 Hb_000567_050 Hb_003464_020--Hb_000567_050 Hb_002044_060 Hb_002044_060 Hb_003464_020--Hb_002044_060 Hb_000023_190--Hb_000567_050 Hb_004218_240 Hb_004218_240 Hb_000023_190--Hb_004218_240 Hb_000023_190--Hb_010381_060 Hb_000023_190--Hb_021409_170 Hb_006252_040--Hb_000820_170 Hb_023386_040 Hb_023386_040 Hb_006252_040--Hb_023386_040 Hb_003952_070 Hb_003952_070 Hb_006252_040--Hb_003952_070 Hb_000538_100 Hb_000538_100 Hb_006252_040--Hb_000538_100 Hb_016898_010 Hb_016898_010 Hb_006252_040--Hb_016898_010 Hb_004881_020 Hb_004881_020 Hb_006252_040--Hb_004881_020 Hb_004689_050 Hb_004689_050 Hb_033834_060--Hb_004689_050 Hb_004429_100 Hb_004429_100 Hb_033834_060--Hb_004429_100 Hb_009627_010 Hb_009627_010 Hb_033834_060--Hb_009627_010 Hb_001172_010 Hb_001172_010 Hb_033834_060--Hb_001172_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
67.3436 34.6788 40.3579 51.214 83.452 115.109
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.2273 38.9837 41.0319 60.8044 36.6923

CAGE analysis