Hb_001489_030

Information

Type -
Description -
Location Contig1489: 25199-30213
Sequence    

Annotation

kegg
ID pop:POPTR_0010s04320g
description nitrate transporter family protein
nr
ID XP_012091953.1
description PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
swissprot
ID Q8H157
description Protein NRT1/ PTR FAMILY 4.6 OS=Arabidopsis thaliana GN=NPF4.6 PE=1 SV=1
trembl
ID A0A067JP04
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21705 PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12350: 25929-26265 , PASA_asmbl_12351: 26335-30120 , PASA_asmbl_12352: 27290-27640
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001489_030 0.0 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
2 Hb_000043_080 0.0862300086 - - lipid binding protein, putative [Ricinus communis]
3 Hb_008503_020 0.0926623157 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
4 Hb_000300_570 0.0984597303 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
5 Hb_002917_030 0.0995451474 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2 [Setaria italica]
6 Hb_000265_010 0.103130243 - - amino acid transporter, putative [Ricinus communis]
7 Hb_012053_030 0.104467383 - - PREDICTED: GDSL esterase/lipase At5g22810 [Jatropha curcas]
8 Hb_003086_200 0.1082418236 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
9 Hb_007666_040 0.1093471019 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic-like [Jatropha curcas]
10 Hb_017987_040 0.1174386845 transcription factor TF Family: MYB hypothetical protein POPTR_0002s11440g [Populus trichocarpa]
11 Hb_005000_220 0.1182784814 - - gulonolactone oxidase, putative [Ricinus communis]
12 Hb_002007_230 0.1188060266 - - PREDICTED: probable linoleate 9S-lipoxygenase 5 [Jatropha curcas]
13 Hb_000556_200 0.1207625351 - - PREDICTED: AT-hook motif nuclear-localized protein 22 [Jatropha curcas]
14 Hb_151364_010 0.1263132355 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
15 Hb_002555_020 0.1274159901 - - Receptor-like protein kinase [Medicago truncatula]
16 Hb_001596_040 0.1274227922 - - PREDICTED: caffeic acid 3-O-methyltransferase 1-like [Populus euphratica]
17 Hb_000322_200 0.1283747066 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH041 [Jatropha curcas]
18 Hb_001864_010 0.1312285342 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001454_160 0.1326840501 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
20 Hb_012395_070 0.1327654811 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]

Gene co-expression network

sample Hb_001489_030 Hb_001489_030 Hb_000043_080 Hb_000043_080 Hb_001489_030--Hb_000043_080 Hb_008503_020 Hb_008503_020 Hb_001489_030--Hb_008503_020 Hb_000300_570 Hb_000300_570 Hb_001489_030--Hb_000300_570 Hb_002917_030 Hb_002917_030 Hb_001489_030--Hb_002917_030 Hb_000265_010 Hb_000265_010 Hb_001489_030--Hb_000265_010 Hb_012053_030 Hb_012053_030 Hb_001489_030--Hb_012053_030 Hb_003086_200 Hb_003086_200 Hb_000043_080--Hb_003086_200 Hb_000556_200 Hb_000556_200 Hb_000043_080--Hb_000556_200 Hb_012395_070 Hb_012395_070 Hb_000043_080--Hb_012395_070 Hb_002007_230 Hb_002007_230 Hb_000043_080--Hb_002007_230 Hb_000043_080--Hb_000265_010 Hb_001709_070 Hb_001709_070 Hb_008503_020--Hb_001709_070 Hb_008503_020--Hb_003086_200 Hb_008503_020--Hb_012053_030 Hb_001864_010 Hb_001864_010 Hb_008503_020--Hb_001864_010 Hb_008053_070 Hb_008053_070 Hb_008503_020--Hb_008053_070 Hb_000300_570--Hb_012053_030 Hb_000300_570--Hb_000265_010 Hb_000300_570--Hb_003086_200 Hb_000300_570--Hb_002007_230 Hb_000185_060 Hb_000185_060 Hb_000300_570--Hb_000185_060 Hb_008020_010 Hb_008020_010 Hb_002917_030--Hb_008020_010 Hb_001596_040 Hb_001596_040 Hb_002917_030--Hb_001596_040 Hb_002917_020 Hb_002917_020 Hb_002917_030--Hb_002917_020 Hb_002917_030--Hb_000043_080 Hb_002917_030--Hb_012053_030 Hb_000265_010--Hb_003086_200 Hb_000265_010--Hb_012053_030 Hb_000265_010--Hb_002007_230 Hb_000265_010--Hb_012395_070 Hb_012053_030--Hb_008053_070 Hb_012053_030--Hb_000185_060 Hb_012053_030--Hb_003086_200 Hb_007666_040 Hb_007666_040 Hb_012053_030--Hb_007666_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.513117 126.82 9.33791 7.03324 0.525716 0.63532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.04387 0.531478 0.489762 134.871 7.95016

CAGE analysis