Hb_001489_070

Information

Type -
Description -
Location Contig1489: 47634-56945
Sequence    

Annotation

kegg
ID rcu:RCOM_0698020
description hypothetical protein
nr
ID XP_012091942.1
description PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JP01
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12357: 47655-47845 , PASA_asmbl_12358: 47858-56937 , PASA_asmbl_12359: 47858-56937 , PASA_asmbl_12362: 51986-52436
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001489_070 0.0 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
2 Hb_078477_040 0.0708655799 - - nuclear movement protein nudc, putative [Ricinus communis]
3 Hb_001731_020 0.0804867032 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
4 Hb_006002_030 0.08104195 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
5 Hb_005462_020 0.0862567972 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
6 Hb_004920_060 0.0869790659 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
7 Hb_008725_130 0.0897918595 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
8 Hb_001901_080 0.0914954238 - - PREDICTED: xylose isomerase [Jatropha curcas]
9 Hb_000261_290 0.0928469262 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
10 Hb_005408_020 0.0966128023 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001473_080 0.0968315762 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
12 Hb_002307_350 0.0969370205 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
13 Hb_002612_010 0.0985830452 - - hypothetical protein JCGZ_19269 [Jatropha curcas]
14 Hb_000120_620 0.0999466713 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a isoform X1 [Jatropha curcas]
15 Hb_000213_070 0.1007320689 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X2 [Jatropha curcas]
16 Hb_006588_050 0.1019881056 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
17 Hb_022250_110 0.1038255713 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
18 Hb_000313_340 0.104241919 - - DNA repair protein xp-E, putative [Ricinus communis]
19 Hb_000021_020 0.1061760946 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Malus domestica]
20 Hb_003097_180 0.1093610168 - - PREDICTED: crossover junction endonuclease MUS81 [Jatropha curcas]

Gene co-expression network

sample Hb_001489_070 Hb_001489_070 Hb_078477_040 Hb_078477_040 Hb_001489_070--Hb_078477_040 Hb_001731_020 Hb_001731_020 Hb_001489_070--Hb_001731_020 Hb_006002_030 Hb_006002_030 Hb_001489_070--Hb_006002_030 Hb_005462_020 Hb_005462_020 Hb_001489_070--Hb_005462_020 Hb_004920_060 Hb_004920_060 Hb_001489_070--Hb_004920_060 Hb_008725_130 Hb_008725_130 Hb_001489_070--Hb_008725_130 Hb_078477_040--Hb_006002_030 Hb_078477_040--Hb_005462_020 Hb_006829_090 Hb_006829_090 Hb_078477_040--Hb_006829_090 Hb_001278_060 Hb_001278_060 Hb_078477_040--Hb_001278_060 Hb_022250_110 Hb_022250_110 Hb_078477_040--Hb_022250_110 Hb_031069_020 Hb_031069_020 Hb_001731_020--Hb_031069_020 Hb_001731_020--Hb_078477_040 Hb_001731_020--Hb_004920_060 Hb_000261_290 Hb_000261_290 Hb_001731_020--Hb_000261_290 Hb_006588_050 Hb_006588_050 Hb_001731_020--Hb_006588_050 Hb_006002_030--Hb_001278_060 Hb_006002_030--Hb_006829_090 Hb_000213_070 Hb_000213_070 Hb_006002_030--Hb_000213_070 Hb_003018_160 Hb_003018_160 Hb_006002_030--Hb_003018_160 Hb_002235_320 Hb_002235_320 Hb_006002_030--Hb_002235_320 Hb_004970_160 Hb_004970_160 Hb_005462_020--Hb_004970_160 Hb_005462_020--Hb_006829_090 Hb_005462_020--Hb_006002_030 Hb_005462_020--Hb_022250_110 Hb_000120_620 Hb_000120_620 Hb_005462_020--Hb_000120_620 Hb_004920_060--Hb_078477_040 Hb_004920_060--Hb_008725_130 Hb_008246_030 Hb_008246_030 Hb_004920_060--Hb_008246_030 Hb_004376_030 Hb_004376_030 Hb_004920_060--Hb_004376_030 Hb_017895_020 Hb_017895_020 Hb_008725_130--Hb_017895_020 Hb_011609_170 Hb_011609_170 Hb_008725_130--Hb_011609_170 Hb_000329_130 Hb_000329_130 Hb_008725_130--Hb_000329_130 Hb_002675_040 Hb_002675_040 Hb_008725_130--Hb_002675_040 Hb_005408_020 Hb_005408_020 Hb_008725_130--Hb_005408_020 Hb_001900_120 Hb_001900_120 Hb_008725_130--Hb_001900_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.8065 26.6202 18.9744 14.4613 57.2308 49.5859
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.5268 4.78366 10.4172 14.9176 5.75243

CAGE analysis