Hb_001489_090

Information

Type -
Description -
Location Contig1489: 66178-69945
Sequence    

Annotation

kegg
ID cit:102612790
description uncharacterized LOC102612790
nr
ID XP_012091940.1
description PREDICTED: uncharacterized protein LOC105649775 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JBU0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21698 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12365: 66200-69898 , PASA_asmbl_12366: 66228-69935
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001489_090 0.0 - - PREDICTED: uncharacterized protein LOC105649775 [Jatropha curcas]
2 Hb_003465_030 0.0397788865 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000347_240 0.0670458344 - - PREDICTED: proteasome subunit alpha type-6 [Pyrus x bretschneideri]
4 Hb_001195_200 0.0685490563 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
5 Hb_000948_160 0.0734107542 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
6 Hb_008453_030 0.0738207598 - - Thioredoxin superfamily protein [Theobroma cacao]
7 Hb_004586_420 0.0746578196 - - PREDICTED: uncharacterized protein LOC105630659 [Jatropha curcas]
8 Hb_000441_200 0.0756555106 - - PREDICTED: small RNA 2'-O-methyltransferase-like isoform X1 [Jatropha curcas]
9 Hb_000431_170 0.0773358887 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
10 Hb_001189_070 0.0778465814 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
11 Hb_000053_020 0.0798070964 - - F-box and wd40 domain protein, putative [Ricinus communis]
12 Hb_001314_050 0.080854754 - - PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Jatropha curcas]
13 Hb_008494_100 0.0812761798 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
14 Hb_000460_030 0.081327738 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
15 Hb_005914_170 0.0821344779 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
16 Hb_003768_030 0.0825214394 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
17 Hb_005054_110 0.0834391156 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
18 Hb_006573_190 0.083573836 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
19 Hb_189216_020 0.0845362998 - - PREDICTED: translin [Jatropha curcas]
20 Hb_031862_100 0.0845956344 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001489_090 Hb_001489_090 Hb_003465_030 Hb_003465_030 Hb_001489_090--Hb_003465_030 Hb_000347_240 Hb_000347_240 Hb_001489_090--Hb_000347_240 Hb_001195_200 Hb_001195_200 Hb_001489_090--Hb_001195_200 Hb_000948_160 Hb_000948_160 Hb_001489_090--Hb_000948_160 Hb_008453_030 Hb_008453_030 Hb_001489_090--Hb_008453_030 Hb_004586_420 Hb_004586_420 Hb_001489_090--Hb_004586_420 Hb_000917_230 Hb_000917_230 Hb_003465_030--Hb_000917_230 Hb_000352_310 Hb_000352_310 Hb_003465_030--Hb_000352_310 Hb_001671_100 Hb_001671_100 Hb_003465_030--Hb_001671_100 Hb_000173_280 Hb_000173_280 Hb_003465_030--Hb_000173_280 Hb_001876_050 Hb_001876_050 Hb_003465_030--Hb_001876_050 Hb_001189_070 Hb_001189_070 Hb_000347_240--Hb_001189_070 Hb_000483_300 Hb_000483_300 Hb_000347_240--Hb_000483_300 Hb_004545_110 Hb_004545_110 Hb_000347_240--Hb_004545_110 Hb_006573_190 Hb_006573_190 Hb_000347_240--Hb_006573_190 Hb_000566_120 Hb_000566_120 Hb_000347_240--Hb_000566_120 Hb_000982_080 Hb_000982_080 Hb_001195_200--Hb_000982_080 Hb_003768_030 Hb_003768_030 Hb_001195_200--Hb_003768_030 Hb_000327_180 Hb_000327_180 Hb_001195_200--Hb_000327_180 Hb_003376_250 Hb_003376_250 Hb_001195_200--Hb_003376_250 Hb_000258_260 Hb_000258_260 Hb_001195_200--Hb_000258_260 Hb_000431_170 Hb_000431_170 Hb_000948_160--Hb_000431_170 Hb_001386_040 Hb_001386_040 Hb_000948_160--Hb_001386_040 Hb_189216_020 Hb_189216_020 Hb_000948_160--Hb_189216_020 Hb_001599_040 Hb_001599_040 Hb_000948_160--Hb_001599_040 Hb_002994_030 Hb_002994_030 Hb_000948_160--Hb_002994_030 Hb_000078_120 Hb_000078_120 Hb_000948_160--Hb_000078_120 Hb_004934_100 Hb_004934_100 Hb_008453_030--Hb_004934_100 Hb_000421_220 Hb_000421_220 Hb_008453_030--Hb_000421_220 Hb_000107_160 Hb_000107_160 Hb_008453_030--Hb_000107_160 Hb_000061_210 Hb_000061_210 Hb_008453_030--Hb_000061_210 Hb_000373_070 Hb_000373_070 Hb_008453_030--Hb_000373_070 Hb_000081_160 Hb_000081_160 Hb_008453_030--Hb_000081_160 Hb_004586_420--Hb_006573_190 Hb_000003_230 Hb_000003_230 Hb_004586_420--Hb_000003_230 Hb_007676_080 Hb_007676_080 Hb_004586_420--Hb_007676_080 Hb_008494_100 Hb_008494_100 Hb_004586_420--Hb_008494_100 Hb_000390_300 Hb_000390_300 Hb_004586_420--Hb_000390_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.5669 16.7744 17.6543 25.285 20.2738 14.6599
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.14 35.6065 22.6832 28.1433 27.8281

CAGE analysis