Hb_001489_110

Information

Type -
Description -
Location Contig1489: 91697-95279
Sequence    

Annotation

kegg
ID cit:102611592
description mitochondrial outer membrane protein porin of 36 kDa-like
nr
ID XP_006483230.1
description PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Citrus sinensis]
swissprot
ID P42056
description Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2
trembl
ID V4TJR4
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032366mg PE=4 SV=1
Gene Ontology
ID GO:0005741
description mitochondrial outer membrane protein porin of 36 kda

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12371: 91450-94806
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001489_110 0.0 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Citrus sinensis]
2 Hb_000060_050 0.0679111743 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
3 Hb_001353_010 0.0681092925 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
4 Hb_002995_050 0.0698155822 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
5 Hb_185255_010 0.0711990781 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
6 Hb_001269_190 0.075591786 - - PREDICTED: Golgi SNAP receptor complex member 1-1 [Jatropha curcas]
7 Hb_025098_010 0.0819593313 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]
8 Hb_045003_010 0.0845405855 - - Stomatin-1, putative [Ricinus communis]
9 Hb_000384_070 0.0875100849 - - conserved hypothetical protein [Ricinus communis]
10 Hb_010997_090 0.0876993146 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
11 Hb_000563_200 0.0888503059 - - hypothetical protein JCGZ_18930 [Jatropha curcas]
12 Hb_002045_070 0.0892649031 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
13 Hb_002301_160 0.090374944 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Jatropha curcas]
14 Hb_002677_020 0.0917356357 - - PREDICTED: uncharacterized protein LOC105642265 [Jatropha curcas]
15 Hb_180343_010 0.094252775 - - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative [Ricinus communis]
16 Hb_002042_150 0.0942961404 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
17 Hb_000009_290 0.0956341413 - - PREDICTED: cold-regulated 413 plasma membrane protein 4-like [Jatropha curcas]
18 Hb_008147_090 0.0959909492 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001307_030 0.0973095638 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
20 Hb_006469_080 0.0988758758 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001489_110 Hb_001489_110 Hb_000060_050 Hb_000060_050 Hb_001489_110--Hb_000060_050 Hb_001353_010 Hb_001353_010 Hb_001489_110--Hb_001353_010 Hb_002995_050 Hb_002995_050 Hb_001489_110--Hb_002995_050 Hb_185255_010 Hb_185255_010 Hb_001489_110--Hb_185255_010 Hb_001269_190 Hb_001269_190 Hb_001489_110--Hb_001269_190 Hb_025098_010 Hb_025098_010 Hb_001489_110--Hb_025098_010 Hb_003305_040 Hb_003305_040 Hb_000060_050--Hb_003305_040 Hb_002660_170 Hb_002660_170 Hb_000060_050--Hb_002660_170 Hb_000212_450 Hb_000212_450 Hb_000060_050--Hb_000212_450 Hb_000252_100 Hb_000252_100 Hb_000060_050--Hb_000252_100 Hb_000173_410 Hb_000173_410 Hb_000060_050--Hb_000173_410 Hb_045003_010 Hb_045003_010 Hb_001353_010--Hb_045003_010 Hb_000808_190 Hb_000808_190 Hb_001353_010--Hb_000808_190 Hb_002303_060 Hb_002303_060 Hb_001353_010--Hb_002303_060 Hb_000563_200 Hb_000563_200 Hb_001353_010--Hb_000563_200 Hb_001353_010--Hb_025098_010 Hb_002995_050--Hb_001269_190 Hb_000384_070 Hb_000384_070 Hb_002995_050--Hb_000384_070 Hb_002995_050--Hb_045003_010 Hb_000087_070 Hb_000087_070 Hb_002995_050--Hb_000087_070 Hb_002995_050--Hb_001353_010 Hb_185255_010--Hb_025098_010 Hb_006683_070 Hb_006683_070 Hb_185255_010--Hb_006683_070 Hb_005144_050 Hb_005144_050 Hb_185255_010--Hb_005144_050 Hb_185255_010--Hb_001269_190 Hb_001307_030 Hb_001307_030 Hb_185255_010--Hb_001307_030 Hb_000179_270 Hb_000179_270 Hb_001269_190--Hb_000179_270 Hb_001269_190--Hb_006683_070 Hb_001269_190--Hb_000087_070 Hb_000310_090 Hb_000310_090 Hb_025098_010--Hb_000310_090 Hb_025098_010--Hb_001307_030 Hb_025098_010--Hb_005144_050 Hb_002289_080 Hb_002289_080 Hb_025098_010--Hb_002289_080 Hb_008841_020 Hb_008841_020 Hb_025098_010--Hb_008841_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.7271 42.4844 53.334 153.001 25.1489 59.3359
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
79.372 127.503 82.7271 62.2471 84.8462

CAGE analysis