Hb_001489_130

Information

Type -
Description -
Location Contig1489: 120652-122359
Sequence    

Annotation

kegg
ID rcu:RCOM_0697960
description Pectate lyase precursor, putative (EC:4.2.2.2)
nr
ID XP_002520133.1
description Pectate lyase precursor, putative [Ricinus communis]
swissprot
ID P15722
description Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59 PE=2 SV=1
trembl
ID B9S2B4
description Pectate lyase OS=Ricinus communis GN=RCOM_0697960 PE=3 SV=1
Gene Ontology
ID GO:0030570
description pectate lyase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12375: 121953-122420
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001489_130 0.0 - - Pectate lyase precursor, putative [Ricinus communis]
2 Hb_025477_070 0.2090223325 - - hypothetical protein CICLE_v10006100mg [Citrus clementina]
3 Hb_010931_140 0.2112491681 - - -
4 Hb_010577_010 0.2154675089 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase-like [Populus euphratica]
5 Hb_004116_020 0.2160626891 - - fad NAD binding oxidoreductases, putative [Ricinus communis]
6 Hb_004079_050 0.2169650738 - - hypothetical protein JCGZ_07229 [Jatropha curcas]
7 Hb_002960_130 0.2191076293 - - hypothetical protein B456_008G036100 [Gossypium raimondii]
8 Hb_001969_020 0.2221299801 - - hypothetical protein POPTR_0010s04700g [Populus trichocarpa]
9 Hb_007416_100 0.2230165692 - - PREDICTED: probable xyloglucan glycosyltransferase 5 [Jatropha curcas]
10 Hb_003071_070 0.2255029513 - - sucrose synthase 3 [Hevea brasiliensis]
11 Hb_007632_100 0.2293408191 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
12 Hb_000103_250 0.2293831539 transcription factor TF Family: Tify PREDICTED: protein TIFY 4B isoform X3 [Jatropha curcas]
13 Hb_007574_070 0.2297107424 - - fatty acid desaturase, putative [Ricinus communis]
14 Hb_001289_020 0.2354635453 - - PREDICTED: uncharacterized protein LOC105635827 [Jatropha curcas]
15 Hb_122636_010 0.2380441783 - - dienelactone hydrolase family protein [Populus trichocarpa]
16 Hb_006634_110 0.238907535 - - BnaC04g40780D [Brassica napus]
17 Hb_000683_100 0.2396686418 - - hypothetical protein JCGZ_22137 [Jatropha curcas]
18 Hb_002660_110 0.240071461 - - PREDICTED: serine/threonine-protein kinase-like protein CCR1 isoform X1 [Jatropha curcas]
19 Hb_000622_350 0.2404904595 - - PREDICTED: protein ABIL1 [Jatropha curcas]
20 Hb_001454_100 0.2422593581 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]

Gene co-expression network

sample Hb_001489_130 Hb_001489_130 Hb_025477_070 Hb_025477_070 Hb_001489_130--Hb_025477_070 Hb_010931_140 Hb_010931_140 Hb_001489_130--Hb_010931_140 Hb_010577_010 Hb_010577_010 Hb_001489_130--Hb_010577_010 Hb_004116_020 Hb_004116_020 Hb_001489_130--Hb_004116_020 Hb_004079_050 Hb_004079_050 Hb_001489_130--Hb_004079_050 Hb_002960_130 Hb_002960_130 Hb_001489_130--Hb_002960_130 Hb_025477_070--Hb_010931_140 Hb_000369_120 Hb_000369_120 Hb_025477_070--Hb_000369_120 Hb_025477_070--Hb_010577_010 Hb_001969_020 Hb_001969_020 Hb_025477_070--Hb_001969_020 Hb_007574_070 Hb_007574_070 Hb_025477_070--Hb_007574_070 Hb_004117_120 Hb_004117_120 Hb_025477_070--Hb_004117_120 Hb_010931_140--Hb_010577_010 Hb_010931_140--Hb_007574_070 Hb_010931_140--Hb_000369_120 Hb_010931_140--Hb_001969_020 Hb_004466_060 Hb_004466_060 Hb_010931_140--Hb_004466_060 Hb_091349_010 Hb_091349_010 Hb_010577_010--Hb_091349_010 Hb_010577_010--Hb_001969_020 Hb_000683_100 Hb_000683_100 Hb_010577_010--Hb_000683_100 Hb_122636_010 Hb_122636_010 Hb_010577_010--Hb_122636_010 Hb_010577_010--Hb_007574_070 Hb_009661_030 Hb_009661_030 Hb_004116_020--Hb_009661_030 Hb_003935_060 Hb_003935_060 Hb_004116_020--Hb_003935_060 Hb_000240_030 Hb_000240_030 Hb_004116_020--Hb_000240_030 Hb_004116_020--Hb_002960_130 Hb_113818_010 Hb_113818_010 Hb_004116_020--Hb_113818_010 Hb_019181_030 Hb_019181_030 Hb_004116_020--Hb_019181_030 Hb_001247_030 Hb_001247_030 Hb_004079_050--Hb_001247_030 Hb_006634_110 Hb_006634_110 Hb_004079_050--Hb_006634_110 Hb_178968_040 Hb_178968_040 Hb_004079_050--Hb_178968_040 Hb_017002_010 Hb_017002_010 Hb_004079_050--Hb_017002_010 Hb_004079_050--Hb_122636_010 Hb_188313_010 Hb_188313_010 Hb_004079_050--Hb_188313_010 Hb_002960_130--Hb_019181_030 Hb_001747_030 Hb_001747_030 Hb_002960_130--Hb_001747_030 Hb_001208_040 Hb_001208_040 Hb_002960_130--Hb_001208_040 Hb_002960_130--Hb_000683_100 Hb_001584_240 Hb_001584_240 Hb_002960_130--Hb_001584_240 Hb_000217_020 Hb_000217_020 Hb_002960_130--Hb_000217_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0397665 0 0.0482761 0.237263 0 0.0492291
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0364296 0.0286579 0.0535454 0.0114618 0.0595931

CAGE analysis