Hb_001489_140

Information

Type transcription factor
Description TF Family: AP2
Location Contig1489: 125146-127005
Sequence    

Annotation

kegg
ID tcc:TCM_011797
description Integrase-type DNA-binding superfamily protein
nr
ID KDP21223.1
description hypothetical protein JCGZ_21694 [Jatropha curcas]
swissprot
ID Q6X5Y6
description Ethylene-responsive transcription factor WRI1 OS=Arabidopsis thaliana GN=WRI1 PE=2 SV=1
trembl
ID A0A067JER0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21694 PE=4 SV=1
Gene Ontology
ID GO:0003677
description ap2-like ethylene-responsive transcription factor at1g16060

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001489_140 0.0 transcription factor TF Family: AP2 hypothetical protein JCGZ_21694 [Jatropha curcas]
2 Hb_000915_150 0.1314854984 - - -
3 Hb_011377_010 0.2456287227 - - PREDICTED: nudix hydrolase 12, mitochondrial-like [Populus euphratica]
4 Hb_000256_120 0.2548659847 - - PREDICTED: probable receptor-like protein kinase At1g80640 [Jatropha curcas]
5 Hb_000164_150 0.2653309183 - - serine/threonine-specific protein kinase, putative [Ricinus communis]
6 Hb_000849_050 0.266724759 - - hypothetical protein VITISV_010852 [Vitis vinifera]
7 Hb_096473_010 0.2721157367 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
8 Hb_000007_380 0.2728765308 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
9 Hb_010423_010 0.2893277927 - - -
10 Hb_000003_740 0.2897108225 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
11 Hb_005839_100 0.2920732149 - - PREDICTED: APO protein 1, chloroplastic isoform X3 [Jatropha curcas]
12 Hb_000638_150 0.2937397639 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
13 Hb_001935_090 0.2999457029 - - PREDICTED: uncharacterized protein LOC105643180 isoform X1 [Jatropha curcas]
14 Hb_172572_010 0.3016635122 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
15 Hb_002325_030 0.3024200013 - - PREDICTED: glucan endo-1,3-beta-glucosidase 2 [Jatropha curcas]
16 Hb_000077_440 0.3033928977 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
17 Hb_004102_050 0.30444981 - - JHL25H03.10 [Jatropha curcas]
18 Hb_144547_010 0.3060143811 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
19 Hb_002818_050 0.307070646 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
20 Hb_009372_050 0.3097408237 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_001489_140 Hb_001489_140 Hb_000915_150 Hb_000915_150 Hb_001489_140--Hb_000915_150 Hb_011377_010 Hb_011377_010 Hb_001489_140--Hb_011377_010 Hb_000256_120 Hb_000256_120 Hb_001489_140--Hb_000256_120 Hb_000164_150 Hb_000164_150 Hb_001489_140--Hb_000164_150 Hb_000849_050 Hb_000849_050 Hb_001489_140--Hb_000849_050 Hb_096473_010 Hb_096473_010 Hb_001489_140--Hb_096473_010 Hb_000915_150--Hb_011377_010 Hb_084858_010 Hb_084858_010 Hb_000915_150--Hb_084858_010 Hb_057247_010 Hb_057247_010 Hb_000915_150--Hb_057247_010 Hb_000915_150--Hb_000849_050 Hb_172572_010 Hb_172572_010 Hb_000915_150--Hb_172572_010 Hb_000165_120 Hb_000165_120 Hb_011377_010--Hb_000165_120 Hb_000692_210 Hb_000692_210 Hb_011377_010--Hb_000692_210 Hb_005725_230 Hb_005725_230 Hb_011377_010--Hb_005725_230 Hb_000836_610 Hb_000836_610 Hb_011377_010--Hb_000836_610 Hb_000638_150 Hb_000638_150 Hb_000256_120--Hb_000638_150 Hb_001122_010 Hb_001122_010 Hb_000256_120--Hb_001122_010 Hb_010270_010 Hb_010270_010 Hb_000256_120--Hb_010270_010 Hb_009710_020 Hb_009710_020 Hb_000256_120--Hb_009710_020 Hb_002781_010 Hb_002781_010 Hb_000256_120--Hb_002781_010 Hb_000242_030 Hb_000242_030 Hb_000256_120--Hb_000242_030 Hb_148346_010 Hb_148346_010 Hb_000164_150--Hb_148346_010 Hb_006831_080 Hb_006831_080 Hb_000164_150--Hb_006831_080 Hb_083493_010 Hb_083493_010 Hb_000164_150--Hb_083493_010 Hb_001882_150 Hb_001882_150 Hb_000164_150--Hb_001882_150 Hb_000085_380 Hb_000085_380 Hb_000164_150--Hb_000085_380 Hb_000685_020 Hb_000685_020 Hb_000164_150--Hb_000685_020 Hb_001935_090 Hb_001935_090 Hb_000849_050--Hb_001935_090 Hb_025964_040 Hb_025964_040 Hb_000849_050--Hb_025964_040 Hb_000849_050--Hb_000242_030 Hb_004052_160 Hb_004052_160 Hb_000849_050--Hb_004052_160 Hb_006120_080 Hb_006120_080 Hb_000849_050--Hb_006120_080 Hb_182249_010 Hb_182249_010 Hb_000849_050--Hb_182249_010 Hb_010423_010 Hb_010423_010 Hb_096473_010--Hb_010423_010 Hb_000108_040 Hb_000108_040 Hb_096473_010--Hb_000108_040 Hb_000197_170 Hb_000197_170 Hb_096473_010--Hb_000197_170 Hb_001004_050 Hb_001004_050 Hb_096473_010--Hb_001004_050 Hb_022593_030 Hb_022593_030 Hb_096473_010--Hb_022593_030 Hb_001369_560 Hb_001369_560 Hb_096473_010--Hb_001369_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0351105 0.0291569 0.053144 0.0544293 0 0.0308519
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0378923 0

CAGE analysis