Hb_001489_150

Information

Type -
Description -
Location Contig1489: 128698-135060
Sequence    

Annotation

kegg
ID rcu:RCOM_0697820
description hypothetical protein
nr
ID XP_011021599.1
description PREDICTED: uncharacterized protein LOC105123623 isoform X2 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A067JBT6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21693 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12376: 128733-135016
cDNA
(Sanger)
(ID:Location)		 033_O07.ab1: 130774-134969 , 047_D16.ab1: 130252-134969

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001489_150 0.0 - - PREDICTED: uncharacterized protein LOC105123623 isoform X2 [Populus euphratica]
2 Hb_005291_030 0.0601321997 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
3 Hb_003952_070 0.0628070088 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_004032_150 0.0629293692 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
5 Hb_000808_270 0.062931168 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
6 Hb_007416_280 0.0632563298 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001638_170 0.0643534133 - - hypothetical protein Csa_3G118170 [Cucumis sativus]
8 Hb_003766_040 0.0651633478 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_002603_120 0.0685403945 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
10 Hb_000085_160 0.0698679353 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
11 Hb_000629_010 0.0712758029 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
12 Hb_000030_300 0.0714638715 - - Thioredoxin, putative [Ricinus communis]
13 Hb_000030_190 0.0721602203 - - PREDICTED: TATA-box-binding protein-like isoform X1 [Citrus sinensis]
14 Hb_001006_140 0.0727321309 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 19 isoform X2 [Jatropha curcas]
15 Hb_000959_260 0.074078689 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
16 Hb_001258_090 0.0746850327 - - PREDICTED: protein spt2-like [Jatropha curcas]
17 Hb_006252_040 0.0757547816 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
18 Hb_001677_210 0.0758749028 - - hypothetical protein JCGZ_01374 [Jatropha curcas]
19 Hb_002026_180 0.0758894215 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
20 Hb_004577_020 0.076963658 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001489_150 Hb_001489_150 Hb_005291_030 Hb_005291_030 Hb_001489_150--Hb_005291_030 Hb_003952_070 Hb_003952_070 Hb_001489_150--Hb_003952_070 Hb_004032_150 Hb_004032_150 Hb_001489_150--Hb_004032_150 Hb_000808_270 Hb_000808_270 Hb_001489_150--Hb_000808_270 Hb_007416_280 Hb_007416_280 Hb_001489_150--Hb_007416_280 Hb_001638_170 Hb_001638_170 Hb_001489_150--Hb_001638_170 Hb_000030_190 Hb_000030_190 Hb_005291_030--Hb_000030_190 Hb_005291_030--Hb_001638_170 Hb_002271_020 Hb_002271_020 Hb_005291_030--Hb_002271_020 Hb_002303_070 Hb_002303_070 Hb_005291_030--Hb_002303_070 Hb_002473_130 Hb_002473_130 Hb_005291_030--Hb_002473_130 Hb_004881_020 Hb_004881_020 Hb_003952_070--Hb_004881_020 Hb_006252_040 Hb_006252_040 Hb_003952_070--Hb_006252_040 Hb_007594_130 Hb_007594_130 Hb_003952_070--Hb_007594_130 Hb_000538_100 Hb_000538_100 Hb_003952_070--Hb_000538_100 Hb_005276_210 Hb_005276_210 Hb_003952_070--Hb_005276_210 Hb_004767_100 Hb_004767_100 Hb_004032_150--Hb_004767_100 Hb_004032_150--Hb_007416_280 Hb_004032_150--Hb_001638_170 Hb_000318_290 Hb_000318_290 Hb_004032_150--Hb_000318_290 Hb_148644_010 Hb_148644_010 Hb_004032_150--Hb_148644_010 Hb_006827_020 Hb_006827_020 Hb_000808_270--Hb_006827_020 Hb_003175_010 Hb_003175_010 Hb_000808_270--Hb_003175_010 Hb_001677_210 Hb_001677_210 Hb_000808_270--Hb_001677_210 Hb_007317_110 Hb_007317_110 Hb_000808_270--Hb_007317_110 Hb_143629_210 Hb_143629_210 Hb_000808_270--Hb_143629_210 Hb_000629_010 Hb_000629_010 Hb_000808_270--Hb_000629_010 Hb_003092_040 Hb_003092_040 Hb_007416_280--Hb_003092_040 Hb_002026_180 Hb_002026_180 Hb_007416_280--Hb_002026_180 Hb_019280_040 Hb_019280_040 Hb_007416_280--Hb_019280_040 Hb_000618_040 Hb_000618_040 Hb_007416_280--Hb_000618_040 Hb_000085_160 Hb_000085_160 Hb_001638_170--Hb_000085_160 Hb_110291_010 Hb_110291_010 Hb_001638_170--Hb_110291_010 Hb_002835_080 Hb_002835_080 Hb_001638_170--Hb_002835_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
101.012 82.7021 56.3875 61.7931 95.1867 165.131
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
119.074 110.142 91.5436 82.7644 47.0846

CAGE analysis