Hb_001490_020

Information

Type -
Description -
Location Contig1490: 57194-67842
Sequence    

Annotation

kegg
ID osa:9268620
description Os10g0357350
nr
ID WP_042918419.1
description MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
swissprot
ID -
description -
trembl
ID C7J7N6
description Os10g0357350 protein OS=Oryza sativa subsp. japonica GN=Os10g0357350 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001490_020 0.0 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
2 Hb_101462_010 0.1039761114 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
3 Hb_000336_130 0.1226120139 - - Triacylglycerol lipase 2 precursor, putative [Ricinus communis]
4 Hb_077242_020 0.1249452125 - - ribosomal protein S4 (mitochondrion) [Ricinus communis]
5 Hb_013420_050 0.1285925907 - - hypothetical protein (mitochondrion) [Vicia faba]
6 Hb_042463_070 0.1302750922 - - 60S ribosomal protein L16, putative [Ricinus communis]
7 Hb_006040_020 0.1304115968 - - ATPase subunit 8 (mitochondrion) [Hevea brasiliensis]
8 Hb_000432_020 0.1313335299 desease resistance Gene Name: Tropomyosin_1 PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
9 Hb_000373_140 0.1425652594 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
10 Hb_006040_010 0.1436350158 - - cytochrome c oxidase subunit 3 (mitochondrion) [Hevea brasiliensis]
11 Hb_003915_030 0.1456012579 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
12 Hb_004375_020 0.1460159656 - - hypothetical protein VITISV_034560 [Vitis vinifera]
13 Hb_041813_030 0.1465447382 - - cytochrome oxidase subunit 1, partial (mitochondrion) [Calochone redingii]
14 Hb_029238_030 0.1485842815 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
15 Hb_156746_010 0.1493241884 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
16 Hb_000123_070 0.150484279 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
17 Hb_004987_040 0.1511665465 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
18 Hb_007533_050 0.1511759852 - - -
19 Hb_002551_030 0.1513120074 - - gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana]
20 Hb_006040_030 0.1518181642 - - hypothetical protein EUTSA_v10001274mg [Eutrema salsugineum]

Gene co-expression network

sample Hb_001490_020 Hb_001490_020 Hb_101462_010 Hb_101462_010 Hb_001490_020--Hb_101462_010 Hb_000336_130 Hb_000336_130 Hb_001490_020--Hb_000336_130 Hb_077242_020 Hb_077242_020 Hb_001490_020--Hb_077242_020 Hb_013420_050 Hb_013420_050 Hb_001490_020--Hb_013420_050 Hb_042463_070 Hb_042463_070 Hb_001490_020--Hb_042463_070 Hb_006040_020 Hb_006040_020 Hb_001490_020--Hb_006040_020 Hb_000373_140 Hb_000373_140 Hb_101462_010--Hb_000373_140 Hb_000123_070 Hb_000123_070 Hb_101462_010--Hb_000123_070 Hb_004208_040 Hb_004208_040 Hb_101462_010--Hb_004208_040 Hb_079902_010 Hb_079902_010 Hb_101462_010--Hb_079902_010 Hb_004987_040 Hb_004987_040 Hb_101462_010--Hb_004987_040 Hb_004375_020 Hb_004375_020 Hb_101462_010--Hb_004375_020 Hb_001999_330 Hb_001999_330 Hb_000336_130--Hb_001999_330 Hb_002010_010 Hb_002010_010 Hb_000336_130--Hb_002010_010 Hb_026188_010 Hb_026188_010 Hb_000336_130--Hb_026188_010 Hb_171685_070 Hb_171685_070 Hb_000336_130--Hb_171685_070 Hb_063885_010 Hb_063885_010 Hb_000336_130--Hb_063885_010 Hb_007101_090 Hb_007101_090 Hb_000336_130--Hb_007101_090 Hb_041813_030 Hb_041813_030 Hb_077242_020--Hb_041813_030 Hb_006040_030 Hb_006040_030 Hb_077242_020--Hb_006040_030 Hb_077242_020--Hb_042463_070 Hb_077242_020--Hb_079902_010 Hb_077242_020--Hb_101462_010 Hb_156746_010 Hb_156746_010 Hb_077242_020--Hb_156746_010 Hb_013420_050--Hb_156746_010 Hb_013420_050--Hb_006040_020 Hb_171685_080 Hb_171685_080 Hb_013420_050--Hb_171685_080 Hb_006040_010 Hb_006040_010 Hb_013420_050--Hb_006040_010 Hb_013420_050--Hb_042463_070 Hb_013420_050--Hb_006040_030 Hb_042463_070--Hb_041813_030 Hb_042463_070--Hb_156746_010 Hb_042463_070--Hb_006040_030 Hb_012163_050 Hb_012163_050 Hb_042463_070--Hb_012163_050 Hb_006040_020--Hb_006040_010 Hb_006040_020--Hb_006040_030 Hb_006040_020--Hb_171685_080 Hb_006040_020--Hb_004987_040 Hb_008085_020 Hb_008085_020 Hb_006040_020--Hb_008085_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0204765 0.00970643 0.0194565 0 0.0108484
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0353573 0.791304

CAGE analysis