Hb_001491_020

Information

Type transcription factor
Description TF Family: bHLH
Location Contig1491: 11785-14528
Sequence    

Annotation

kegg
ID rcu:RCOM_0699220
description DNA binding protein, putative
nr
ID XP_002520177.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q0JXE7
description Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1
trembl
ID B9S2F8
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0699220 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh79

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12402: 11312-14908 , PASA_asmbl_12403: 12145-12432 , PASA_asmbl_12404: 12812-13311
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001491_020 0.0 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
2 Hb_001544_050 0.1395067071 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
3 Hb_001504_210 0.1410766504 - - PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
4 Hb_000438_160 0.1422322718 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000465_410 0.144350453 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000847_130 0.1462316422 - - PREDICTED: fimbrin-2 [Jatropha curcas]
7 Hb_001817_040 0.1495642458 - - myosin XI, putative [Ricinus communis]
8 Hb_000017_200 0.1495905305 - - PREDICTED: uncharacterized protein LOC105645766 [Jatropha curcas]
9 Hb_008053_030 0.1513459562 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
10 Hb_005237_020 0.1545733286 - - Kinesin heavy chain, putative [Ricinus communis]
11 Hb_004117_090 0.1551513569 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 70 [Jatropha curcas]
12 Hb_001140_190 0.1565845664 - - PREDICTED: A-kinase anchor protein 9 [Jatropha curcas]
13 Hb_006133_020 0.158036046 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
14 Hb_004007_140 0.1604952803 - - PREDICTED: cyclin-D5-1-like isoform X1 [Jatropha curcas]
15 Hb_004994_330 0.1622540395 - - DNA binding protein, putative [Ricinus communis]
16 Hb_018133_070 0.1633069551 - - PREDICTED: RING-H2 finger protein ATL43 [Jatropha curcas]
17 Hb_010889_010 0.1637141664 - - PREDICTED: myosin-12 [Jatropha curcas]
18 Hb_002374_470 0.1649879705 - - PREDICTED: filament-like plant protein isoform X2 [Jatropha curcas]
19 Hb_001269_060 0.1694400991 - - PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
20 Hb_011033_010 0.1702829441 - - ATP-binding cassette transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_001491_020 Hb_001491_020 Hb_001544_050 Hb_001544_050 Hb_001491_020--Hb_001544_050 Hb_001504_210 Hb_001504_210 Hb_001491_020--Hb_001504_210 Hb_000438_160 Hb_000438_160 Hb_001491_020--Hb_000438_160 Hb_000465_410 Hb_000465_410 Hb_001491_020--Hb_000465_410 Hb_000847_130 Hb_000847_130 Hb_001491_020--Hb_000847_130 Hb_001817_040 Hb_001817_040 Hb_001491_020--Hb_001817_040 Hb_001180_010 Hb_001180_010 Hb_001544_050--Hb_001180_010 Hb_000390_210 Hb_000390_210 Hb_001544_050--Hb_000390_210 Hb_001544_050--Hb_000465_410 Hb_002701_070 Hb_002701_070 Hb_001544_050--Hb_002701_070 Hb_000749_260 Hb_000749_260 Hb_001544_050--Hb_000749_260 Hb_004994_330 Hb_004994_330 Hb_001544_050--Hb_004994_330 Hb_001504_210--Hb_001817_040 Hb_001504_210--Hb_000847_130 Hb_004007_140 Hb_004007_140 Hb_001504_210--Hb_004007_140 Hb_001140_190 Hb_001140_190 Hb_001504_210--Hb_001140_190 Hb_000071_060 Hb_000071_060 Hb_001504_210--Hb_000071_060 Hb_000438_160--Hb_001140_190 Hb_000017_200 Hb_000017_200 Hb_000438_160--Hb_000017_200 Hb_000331_170 Hb_000331_170 Hb_000438_160--Hb_000331_170 Hb_000438_160--Hb_000071_060 Hb_000932_110 Hb_000932_110 Hb_000438_160--Hb_000932_110 Hb_000465_410--Hb_002701_070 Hb_000465_410--Hb_001180_010 Hb_000032_610 Hb_000032_610 Hb_000465_410--Hb_000032_610 Hb_000465_410--Hb_004994_330 Hb_000465_410--Hb_000749_260 Hb_001279_240 Hb_001279_240 Hb_000847_130--Hb_001279_240 Hb_000847_130--Hb_001817_040 Hb_051663_010 Hb_051663_010 Hb_000847_130--Hb_051663_010 Hb_000748_120 Hb_000748_120 Hb_000847_130--Hb_000748_120 Hb_000847_130--Hb_000017_200 Hb_001817_040--Hb_001140_190 Hb_001817_040--Hb_000748_120 Hb_001817_040--Hb_000071_060 Hb_001817_040--Hb_004007_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.12244 0.454715 7.87033 5.55666 0.27936 0.103757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.330847 0 0.848194 0.39993 4.28848

CAGE analysis