Hb_001491_030

Information

Type -
Description -
Location Contig1491: 44481-50342
Sequence    

Annotation

kegg
ID pop:POPTR_0010s04930g
description POPTRDRAFT_726336; hypothetical protein
nr
ID XP_012091985.1
description PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JET6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21729 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12405: 44403-50208 , PASA_asmbl_12406: 44618-50195 , PASA_asmbl_12407: 49307-49688
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001491_030 0.0 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
2 Hb_007765_040 0.0900826266 - - Cytosolic enolase isoform 3 [Theobroma cacao]
3 Hb_000056_130 0.0956421427 - - Sucrose Transporter 2C [Hevea brasiliensis subsp. brasiliensis]
4 Hb_002226_080 0.1006132697 - - PREDICTED: uncharacterized protein LOC105641402 isoform X1 [Jatropha curcas]
5 Hb_000058_110 0.1006919237 - - PREDICTED: putative BPI/LBP family protein At1g04970 isoform X1 [Jatropha curcas]
6 Hb_001675_190 0.1010812063 - - PREDICTED: probable plastidic glucose transporter 3 [Jatropha curcas]
7 Hb_000359_310 0.1055217852 - - hypothetical protein JCGZ_03934 [Jatropha curcas]
8 Hb_002289_060 0.106960402 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000014_040 0.1074259114 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000062_540 0.1086838412 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000390_050 0.1112181883 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
12 Hb_006810_030 0.1118524563 - - Uncharacterized protein isoform 1 [Theobroma cacao]
13 Hb_002631_070 0.1119327503 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
14 Hb_000399_060 0.1141858573 - - PREDICTED: uncharacterized protein LOC105649658 [Jatropha curcas]
15 Hb_021495_020 0.1173525807 - - chitinase, putative [Ricinus communis]
16 Hb_011926_040 0.1182419529 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
17 Hb_001157_230 0.1209890124 - - Protein AFR, putative [Ricinus communis]
18 Hb_000136_140 0.1231322559 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
19 Hb_001440_020 0.1241108193 - - exocyst componenet sec8, putative [Ricinus communis]
20 Hb_007153_050 0.1259688471 - - PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]

Gene co-expression network

sample Hb_001491_030 Hb_001491_030 Hb_007765_040 Hb_007765_040 Hb_001491_030--Hb_007765_040 Hb_000056_130 Hb_000056_130 Hb_001491_030--Hb_000056_130 Hb_002226_080 Hb_002226_080 Hb_001491_030--Hb_002226_080 Hb_000058_110 Hb_000058_110 Hb_001491_030--Hb_000058_110 Hb_001675_190 Hb_001675_190 Hb_001491_030--Hb_001675_190 Hb_000359_310 Hb_000359_310 Hb_001491_030--Hb_000359_310 Hb_000390_050 Hb_000390_050 Hb_007765_040--Hb_000390_050 Hb_003998_040 Hb_003998_040 Hb_007765_040--Hb_003998_040 Hb_003097_140 Hb_003097_140 Hb_007765_040--Hb_003097_140 Hb_005218_020 Hb_005218_020 Hb_007765_040--Hb_005218_020 Hb_000066_030 Hb_000066_030 Hb_007765_040--Hb_000066_030 Hb_007416_210 Hb_007416_210 Hb_007765_040--Hb_007416_210 Hb_000056_130--Hb_002226_080 Hb_008511_020 Hb_008511_020 Hb_000056_130--Hb_008511_020 Hb_009569_040 Hb_009569_040 Hb_000056_130--Hb_009569_040 Hb_002928_090 Hb_002928_090 Hb_000056_130--Hb_002928_090 Hb_001157_230 Hb_001157_230 Hb_000056_130--Hb_001157_230 Hb_006810_030 Hb_006810_030 Hb_000056_130--Hb_006810_030 Hb_000004_020 Hb_000004_020 Hb_002226_080--Hb_000004_020 Hb_002226_080--Hb_009569_040 Hb_002226_080--Hb_000058_110 Hb_002226_080--Hb_002928_090 Hb_001946_180 Hb_001946_180 Hb_002226_080--Hb_001946_180 Hb_001440_020 Hb_001440_020 Hb_000058_110--Hb_001440_020 Hb_009252_030 Hb_009252_030 Hb_000058_110--Hb_009252_030 Hb_005977_100 Hb_005977_100 Hb_000058_110--Hb_005977_100 Hb_000359_190 Hb_000359_190 Hb_000058_110--Hb_000359_190 Hb_011926_040 Hb_011926_040 Hb_001675_190--Hb_011926_040 Hb_001675_190--Hb_000058_110 Hb_001675_190--Hb_000056_130 Hb_000200_350 Hb_000200_350 Hb_001675_190--Hb_000200_350 Hb_001675_190--Hb_006810_030 Hb_000370_020 Hb_000370_020 Hb_000359_310--Hb_000370_020 Hb_002289_060 Hb_002289_060 Hb_000359_310--Hb_002289_060 Hb_009661_030 Hb_009661_030 Hb_000359_310--Hb_009661_030 Hb_000359_310--Hb_001946_180 Hb_000062_540 Hb_000062_540 Hb_000359_310--Hb_000062_540 Hb_000256_150 Hb_000256_150 Hb_000359_310--Hb_000256_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.31379 2.83273 5.58417 16.0136 6.94866 7.9374
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.50348 3.20706 6.04528 4.16515 12.3702

CAGE analysis