Hb_001493_010

Information

Type -
Description -
Location Contig1493: 8777-15571
Sequence    

Annotation

kegg
ID pop:POPTR_0001s16160g
description lipase class 3 family protein
nr
ID AFQ93686.1
description triacylglycerol acidic lipase TAL4 [Ricinus communis]
swissprot
ID O59952
description Lipase OS=Thermomyces lanuginosus GN=LIP PE=1 SV=1
trembl
ID A0A0D3L467
description Triacylglycerol acidic lipase TAL4 OS=Ricinus communis GN=TAL4 PE=2 SV=1
Gene Ontology
ID GO:0016787
description lipase class 3 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12424: 14386-14500
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001493_010 0.0 - - triacylglycerol acidic lipase TAL4 [Ricinus communis]
2 Hb_010831_020 0.1477583685 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
3 Hb_000886_060 0.1613434878 - - PREDICTED: serine/threonine-protein kinase SAPK10 isoform X2 [Vitis vinifera]
4 Hb_181975_010 0.174502693 - - PREDICTED: probable disease resistance protein At4g27220 [Populus euphratica]
5 Hb_000003_390 0.1789893534 - - hypothetical protein POPTR_0003s20040g [Populus trichocarpa]
6 Hb_170487_010 0.1790841203 - - -
7 Hb_001052_040 0.1806738279 - - Ferredoxin-3, chloroplast precursor, putative [Ricinus communis]
8 Hb_075449_020 0.1840020053 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
9 Hb_000453_100 0.1854760146 - - PREDICTED: metallothionein-like protein 1 [Sesamum indicum]
10 Hb_002742_080 0.1867854554 - - unknown [Populus trichocarpa]
11 Hb_128376_010 0.1868282522 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_005333_030 0.1886524672 - - hypothetical protein JCGZ_15866 [Jatropha curcas]
13 Hb_080147_080 0.1913349067 - - peroxiredoxin, putative [Ricinus communis]
14 Hb_007257_050 0.1919680844 - - protein with unknown function [Ricinus communis]
15 Hb_079733_010 0.1924877596 - - -
16 Hb_002316_050 0.1928034998 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000086_100 0.1940296686 - - hypothetical protein POPTR_0005s24730g [Populus trichocarpa]
18 Hb_000152_670 0.1964167284 - - hypothetical protein VITISV_037603 [Vitis vinifera]
19 Hb_006420_020 0.1974117622 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
20 Hb_010584_010 0.200563412 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]

Gene co-expression network

sample Hb_001493_010 Hb_001493_010 Hb_010831_020 Hb_010831_020 Hb_001493_010--Hb_010831_020 Hb_000886_060 Hb_000886_060 Hb_001493_010--Hb_000886_060 Hb_181975_010 Hb_181975_010 Hb_001493_010--Hb_181975_010 Hb_000003_390 Hb_000003_390 Hb_001493_010--Hb_000003_390 Hb_170487_010 Hb_170487_010 Hb_001493_010--Hb_170487_010 Hb_001052_040 Hb_001052_040 Hb_001493_010--Hb_001052_040 Hb_001638_040 Hb_001638_040 Hb_010831_020--Hb_001638_040 Hb_000540_120 Hb_000540_120 Hb_010831_020--Hb_000540_120 Hb_001691_150 Hb_001691_150 Hb_010831_020--Hb_001691_150 Hb_002316_050 Hb_002316_050 Hb_010831_020--Hb_002316_050 Hb_002739_150 Hb_002739_150 Hb_010831_020--Hb_002739_150 Hb_155702_010 Hb_155702_010 Hb_010831_020--Hb_155702_010 Hb_000886_060--Hb_001052_040 Hb_073973_160 Hb_073973_160 Hb_000886_060--Hb_073973_160 Hb_010584_010 Hb_010584_010 Hb_000886_060--Hb_010584_010 Hb_002002_030 Hb_002002_030 Hb_000886_060--Hb_002002_030 Hb_000331_160 Hb_000331_160 Hb_000886_060--Hb_000331_160 Hb_000261_290 Hb_000261_290 Hb_000886_060--Hb_000261_290 Hb_007257_050 Hb_007257_050 Hb_181975_010--Hb_007257_050 Hb_001907_100 Hb_001907_100 Hb_181975_010--Hb_001907_100 Hb_181975_010--Hb_000003_390 Hb_031089_030 Hb_031089_030 Hb_181975_010--Hb_031089_030 Hb_007978_020 Hb_007978_020 Hb_181975_010--Hb_007978_020 Hb_000003_390--Hb_007257_050 Hb_003157_010 Hb_003157_010 Hb_000003_390--Hb_003157_010 Hb_000997_410 Hb_000997_410 Hb_000003_390--Hb_000997_410 Hb_000375_370 Hb_000375_370 Hb_000003_390--Hb_000375_370 Hb_009028_030 Hb_009028_030 Hb_000003_390--Hb_009028_030 Hb_006501_020 Hb_006501_020 Hb_000003_390--Hb_006501_020 Hb_170487_010--Hb_001052_040 Hb_015354_010 Hb_015354_010 Hb_170487_010--Hb_015354_010 Hb_099046_010 Hb_099046_010 Hb_170487_010--Hb_099046_010 Hb_170487_010--Hb_000886_060 Hb_173178_020 Hb_173178_020 Hb_170487_010--Hb_173178_020 Hb_000152_670 Hb_000152_670 Hb_170487_010--Hb_000152_670 Hb_001052_040--Hb_015354_010 Hb_001052_040--Hb_000152_670 Hb_002742_080 Hb_002742_080 Hb_001052_040--Hb_002742_080 Hb_001910_020 Hb_001910_020 Hb_001052_040--Hb_001910_020 Hb_001052_040--Hb_173178_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.740091 0.783377 0.0924064 0.461227 0.434432 0.628143
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.22182 0.0981884 0 0.151412 0.0465899

CAGE analysis