Hb_001493_030

Information

Type -
Description -
Location Contig1493: 42281-46015
Sequence    

Annotation

kegg
ID tcc:TCM_029263
description Regulatory particle triple-A 1A
nr
ID EYU45921.1
description hypothetical protein MIMGU_mgv1a005351mg [Erythranthe guttata]
swissprot
ID Q9FXT9
description 26S protease regulatory subunit 7 OS=Oryza sativa subsp. japonica GN=RPT1A PE=2 SV=1
trembl
ID A0A022S0Z4
description Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a005351mg PE=3 SV=1
Gene Ontology
ID GO:0005737
description 26s protease regulatory subunit 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12428: 42356-46094
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001493_030 0.0 - - hypothetical protein MIMGU_mgv1a005351mg [Erythranthe guttata]
2 Hb_000700_140 0.0548180974 - - PREDICTED: guanine nucleotide-binding protein-like NSN1 [Jatropha curcas]
3 Hb_007317_110 0.0568687826 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
4 Hb_006827_020 0.0627104439 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000152_380 0.0628190366 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
6 Hb_004221_020 0.0638139559 - - protein binding protein, putative [Ricinus communis]
7 Hb_000618_030 0.0642547404 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like isoform X4 [Populus euphratica]
8 Hb_000879_200 0.0649386845 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
9 Hb_001143_160 0.0655902197 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]
10 Hb_000011_200 0.0656594793 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
11 Hb_002025_020 0.0667663662 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Jatropha curcas]
12 Hb_002835_370 0.0676315249 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
13 Hb_000808_270 0.068374365 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
14 Hb_004414_060 0.0699912738 - - hypothetical protein JCGZ_17225 [Jatropha curcas]
15 Hb_002078_020 0.0703791007 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
16 Hb_001369_420 0.0705976242 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
17 Hb_009627_010 0.0725522511 - - Protein dom-3, putative [Ricinus communis]
18 Hb_002271_030 0.0728293156 - - Vacuolar protein sorting protein, putative [Ricinus communis]
19 Hb_048937_040 0.0742417914 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
20 Hb_123352_020 0.0742961385 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]

Gene co-expression network

sample Hb_001493_030 Hb_001493_030 Hb_000700_140 Hb_000700_140 Hb_001493_030--Hb_000700_140 Hb_007317_110 Hb_007317_110 Hb_001493_030--Hb_007317_110 Hb_006827_020 Hb_006827_020 Hb_001493_030--Hb_006827_020 Hb_000152_380 Hb_000152_380 Hb_001493_030--Hb_000152_380 Hb_004221_020 Hb_004221_020 Hb_001493_030--Hb_004221_020 Hb_000618_030 Hb_000618_030 Hb_001493_030--Hb_000618_030 Hb_030116_020 Hb_030116_020 Hb_000700_140--Hb_030116_020 Hb_143629_110 Hb_143629_110 Hb_000700_140--Hb_143629_110 Hb_000123_210 Hb_000123_210 Hb_000700_140--Hb_000123_210 Hb_000367_010 Hb_000367_010 Hb_000700_140--Hb_000367_010 Hb_106371_010 Hb_106371_010 Hb_000700_140--Hb_106371_010 Hb_007317_110--Hb_006827_020 Hb_000085_160 Hb_000085_160 Hb_007317_110--Hb_000085_160 Hb_003665_060 Hb_003665_060 Hb_007317_110--Hb_003665_060 Hb_000808_270 Hb_000808_270 Hb_007317_110--Hb_000808_270 Hb_003964_070 Hb_003964_070 Hb_007317_110--Hb_003964_070 Hb_007059_010 Hb_007059_010 Hb_007317_110--Hb_007059_010 Hb_006827_020--Hb_000808_270 Hb_006827_020--Hb_007059_010 Hb_000538_100 Hb_000538_100 Hb_006827_020--Hb_000538_100 Hb_000011_200 Hb_000011_200 Hb_006827_020--Hb_000011_200 Hb_003813_130 Hb_003813_130 Hb_006827_020--Hb_003813_130 Hb_002518_280 Hb_002518_280 Hb_000152_380--Hb_002518_280 Hb_004310_150 Hb_004310_150 Hb_000152_380--Hb_004310_150 Hb_000780_230 Hb_000780_230 Hb_000152_380--Hb_000780_230 Hb_010618_010 Hb_010618_010 Hb_000152_380--Hb_010618_010 Hb_001248_060 Hb_001248_060 Hb_000152_380--Hb_001248_060 Hb_000152_380--Hb_004221_020 Hb_002835_370 Hb_002835_370 Hb_004221_020--Hb_002835_370 Hb_010139_040 Hb_010139_040 Hb_004221_020--Hb_010139_040 Hb_000289_060 Hb_000289_060 Hb_004221_020--Hb_000289_060 Hb_000165_250 Hb_000165_250 Hb_004221_020--Hb_000165_250 Hb_000072_220 Hb_000072_220 Hb_004221_020--Hb_000072_220 Hb_002025_020 Hb_002025_020 Hb_004221_020--Hb_002025_020 Hb_009627_010 Hb_009627_010 Hb_000618_030--Hb_009627_010 Hb_000025_110 Hb_000025_110 Hb_000618_030--Hb_000025_110 Hb_001444_010 Hb_001444_010 Hb_000618_030--Hb_001444_010 Hb_000618_030--Hb_000538_100 Hb_000879_200 Hb_000879_200 Hb_000618_030--Hb_000879_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
98.2365 56.9893 54.6158 54.9153 123.169 112.062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
62.9402 71.9671 90.671 79.2605 47.351

CAGE analysis