Hb_001493_050

Information

Type -
Description -
Location Contig1493: 52735-56605
Sequence    

Annotation

kegg
ID rcu:RCOM_0995420
description hypothetical protein
nr
ID XP_012068782.1
description PREDICTED: uncharacterized protein LOC105631312 [Jatropha curcas]
swissprot
ID O13942
description Uncharacterized protein C23H3.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC23H3.12c PE=4 SV=1
trembl
ID A0A067KWT2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24616 PE=4 SV=1
Gene Ontology
ID GO:0005739
description PREDICTED: uncharacterized protein LOC105631312

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12431: 52705-56539 , PASA_asmbl_12432: 57461-60501
cDNA
(Sanger)
(ID:Location)		 037_P13.ab1: 52726-52981

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001493_050 0.0 - - PREDICTED: uncharacterized protein LOC105631312 [Jatropha curcas]
2 Hb_000402_160 0.0716692101 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
3 Hb_004157_020 0.0898232718 - - PREDICTED: histone H2B-like [Gossypium raimondii]
4 Hb_000676_390 0.0915595995 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
5 Hb_002226_060 0.0961103305 - - PREDICTED: uncharacterized protein LOC105641377 [Jatropha curcas]
6 Hb_000731_190 0.0963741851 - - PREDICTED: cardiolipin synthase (CMP-forming), mitochondrial [Jatropha curcas]
7 Hb_002540_080 0.0972034719 - - cysteine-type peptidase, putative [Ricinus communis]
8 Hb_011512_070 0.0990959359 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
9 Hb_002228_070 0.107071619 - - inosine triphosphate pyrophosphatase, putative [Ricinus communis]
10 Hb_005446_010 0.1080483303 - - PREDICTED: zinc finger protein 830 [Jatropha curcas]
11 Hb_018133_020 0.1113770773 - - transporter, putative [Ricinus communis]
12 Hb_026053_020 0.111597172 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
13 Hb_024074_010 0.1118066578 - - PREDICTED: cytochrome c [Jatropha curcas]
14 Hb_003018_010 0.1118338266 - - PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Jatropha curcas]
15 Hb_003669_020 0.1120831773 - - PREDICTED: high mobility group nucleosome-binding domain-containing protein 5 [Populus euphratica]
16 Hb_001188_030 0.1123717757 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
17 Hb_002260_010 0.1123722431 - - PREDICTED: coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial [Sesamum indicum]
18 Hb_000302_140 0.1124554793 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
19 Hb_131181_010 0.1126196754 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
20 Hb_006355_040 0.1127955648 - - PREDICTED: chaperonin CPN60-2, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_001493_050 Hb_001493_050 Hb_000402_160 Hb_000402_160 Hb_001493_050--Hb_000402_160 Hb_004157_020 Hb_004157_020 Hb_001493_050--Hb_004157_020 Hb_000676_390 Hb_000676_390 Hb_001493_050--Hb_000676_390 Hb_002226_060 Hb_002226_060 Hb_001493_050--Hb_002226_060 Hb_000731_190 Hb_000731_190 Hb_001493_050--Hb_000731_190 Hb_002540_080 Hb_002540_080 Hb_001493_050--Hb_002540_080 Hb_002228_070 Hb_002228_070 Hb_000402_160--Hb_002228_070 Hb_000402_160--Hb_002226_060 Hb_001341_150 Hb_001341_150 Hb_000402_160--Hb_001341_150 Hb_010098_050 Hb_010098_050 Hb_000402_160--Hb_010098_050 Hb_000302_140 Hb_000302_140 Hb_000402_160--Hb_000302_140 Hb_004889_020 Hb_004889_020 Hb_004157_020--Hb_004889_020 Hb_004410_080 Hb_004410_080 Hb_004157_020--Hb_004410_080 Hb_018133_020 Hb_018133_020 Hb_004157_020--Hb_018133_020 Hb_000633_020 Hb_000633_020 Hb_004157_020--Hb_000633_020 Hb_004157_020--Hb_000676_390 Hb_026889_030 Hb_026889_030 Hb_004157_020--Hb_026889_030 Hb_001188_030 Hb_001188_030 Hb_000676_390--Hb_001188_030 Hb_008071_020 Hb_008071_020 Hb_000676_390--Hb_008071_020 Hb_000676_390--Hb_004889_020 Hb_000676_390--Hb_026889_030 Hb_001931_010 Hb_001931_010 Hb_000676_390--Hb_001931_010 Hb_000676_390--Hb_002540_080 Hb_011512_070 Hb_011512_070 Hb_002226_060--Hb_011512_070 Hb_000656_240 Hb_000656_240 Hb_002226_060--Hb_000656_240 Hb_002226_060--Hb_001341_150 Hb_003018_010 Hb_003018_010 Hb_002226_060--Hb_003018_010 Hb_000529_030 Hb_000529_030 Hb_002226_060--Hb_000529_030 Hb_001279_080 Hb_001279_080 Hb_002226_060--Hb_001279_080 Hb_006478_160 Hb_006478_160 Hb_000731_190--Hb_006478_160 Hb_000417_360 Hb_000417_360 Hb_000731_190--Hb_000417_360 Hb_000571_020 Hb_000571_020 Hb_000731_190--Hb_000571_020 Hb_091433_020 Hb_091433_020 Hb_000731_190--Hb_091433_020 Hb_001979_040 Hb_001979_040 Hb_000731_190--Hb_001979_040 Hb_000035_370 Hb_000035_370 Hb_000731_190--Hb_000035_370 Hb_003622_030 Hb_003622_030 Hb_002540_080--Hb_003622_030 Hb_002540_080--Hb_026889_030 Hb_012799_170 Hb_012799_170 Hb_002540_080--Hb_012799_170 Hb_000160_180 Hb_000160_180 Hb_002540_080--Hb_000160_180 Hb_001318_260 Hb_001318_260 Hb_002540_080--Hb_001318_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.7887 2.3245 8.42146 2.68462 3.22639 2.62629
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.21477 12.3679 6.31439 3.8335 3.98432

CAGE analysis