Hb_001493_100

Information

Type -
Description -
Location Contig1493: 68516-73270
Sequence    

Annotation

kegg
ID rcu:RCOM_0333490
description ubiquitin-conjugating enzyme E2 j2, putative (EC:6.3.2.19)
nr
ID XP_012068790.1
description PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
swissprot
ID Q9SHI7
description Ubiquitin-conjugating enzyme E2 34 OS=Arabidopsis thaliana GN=UBC34 PE=2 SV=1
trembl
ID A0A067L948
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24623 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12436: 68563-74192 , PASA_asmbl_12437: 68563-74155 , PASA_asmbl_12438: 72990-74209 , PASA_asmbl_12440: 68563-74116 , PASA_asmbl_12441: 72613-72824 , PASA_asmbl_12442: 72350-73257 , PASA_asmbl_12443: 69904-70242
cDNA
(Sanger)
(ID:Location)		 009_J02.ab1: 69003-74116 , 027_P23.ab1: 73030-74209

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001493_100 0.0 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
2 Hb_004813_010 0.0686433395 - - nucleic acid binding protein, putative [Ricinus communis]
3 Hb_178968_150 0.070332316 - - zinc finger protein, putative [Ricinus communis]
4 Hb_000028_470 0.0724933221 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
5 Hb_001269_150 0.0751492634 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
6 Hb_000714_020 0.0774226951 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
7 Hb_000784_090 0.0775680584 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
8 Hb_005754_020 0.0791444279 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
9 Hb_000282_060 0.081879575 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
10 Hb_007992_030 0.0832967807 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
11 Hb_002044_090 0.0838925209 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
12 Hb_001514_020 0.0839717155 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
13 Hb_033491_010 0.0909376126 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
14 Hb_001623_370 0.0916440016 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002660_140 0.0917183544 - - hypothetical protein POPTR_0006s13060g [Populus trichocarpa]
16 Hb_000847_070 0.0928483095 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
17 Hb_000062_230 0.0937476719 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
18 Hb_002377_040 0.0942716459 - - serine/threonine protein kinase, putative [Ricinus communis]
19 Hb_000732_260 0.0947690906 - - PREDICTED: telomerase Cajal body protein 1 [Jatropha curcas]
20 Hb_000085_340 0.0960993216 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001493_100 Hb_001493_100 Hb_004813_010 Hb_004813_010 Hb_001493_100--Hb_004813_010 Hb_178968_150 Hb_178968_150 Hb_001493_100--Hb_178968_150 Hb_000028_470 Hb_000028_470 Hb_001493_100--Hb_000028_470 Hb_001269_150 Hb_001269_150 Hb_001493_100--Hb_001269_150 Hb_000714_020 Hb_000714_020 Hb_001493_100--Hb_000714_020 Hb_000784_090 Hb_000784_090 Hb_001493_100--Hb_000784_090 Hb_001514_020 Hb_001514_020 Hb_004813_010--Hb_001514_020 Hb_004096_170 Hb_004096_170 Hb_004813_010--Hb_004096_170 Hb_002044_090 Hb_002044_090 Hb_004813_010--Hb_002044_090 Hb_000847_070 Hb_000847_070 Hb_004813_010--Hb_000847_070 Hb_000062_230 Hb_000062_230 Hb_004813_010--Hb_000062_230 Hb_178968_150--Hb_000028_470 Hb_178968_150--Hb_004813_010 Hb_005754_020 Hb_005754_020 Hb_178968_150--Hb_005754_020 Hb_004738_090 Hb_004738_090 Hb_178968_150--Hb_004738_090 Hb_178968_150--Hb_000784_090 Hb_000028_470--Hb_005754_020 Hb_002377_040 Hb_002377_040 Hb_000028_470--Hb_002377_040 Hb_001673_120 Hb_001673_120 Hb_000028_470--Hb_001673_120 Hb_000028_470--Hb_000784_090 Hb_007441_340 Hb_007441_340 Hb_001269_150--Hb_007441_340 Hb_002400_220 Hb_002400_220 Hb_001269_150--Hb_002400_220 Hb_000172_120 Hb_000172_120 Hb_001269_150--Hb_000172_120 Hb_000732_260 Hb_000732_260 Hb_001269_150--Hb_000732_260 Hb_001269_150--Hb_004813_010 Hb_011609_030 Hb_011609_030 Hb_000714_020--Hb_011609_030 Hb_001623_370 Hb_001623_370 Hb_000714_020--Hb_001623_370 Hb_000714_020--Hb_001514_020 Hb_002619_010 Hb_002619_010 Hb_000714_020--Hb_002619_010 Hb_004374_010 Hb_004374_010 Hb_000714_020--Hb_004374_010 Hb_033491_010 Hb_033491_010 Hb_000784_090--Hb_033491_010 Hb_000481_010 Hb_000481_010 Hb_000784_090--Hb_000481_010 Hb_002215_050 Hb_002215_050 Hb_000784_090--Hb_002215_050 Hb_002249_140 Hb_002249_140 Hb_000784_090--Hb_002249_140 Hb_001369_060 Hb_001369_060 Hb_000784_090--Hb_001369_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
632.436 95.2102 64.9008 55.7693 405.031 488.267
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
470.608 325.819 263.187 55.3781 35.0849

CAGE analysis