Hb_001493_150

Information

Type -
Description -
Location Contig1493: 107671-114468
Sequence    

Annotation

kegg
ID tcc:TCM_029248
description Alanine aminotransferase 2
nr
ID XP_012068795.1
description PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
swissprot
ID Q9LDV4
description Alanine aminotransferase 2, mitochondrial OS=Arabidopsis thaliana GN=ALAAT2 PE=2 SV=1
trembl
ID A0A067L953
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24628 PE=4 SV=1
Gene Ontology
ID GO:0005739
description alanine aminotransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12447: 103555-106943 , PASA_asmbl_12449: 107652-114455
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001493_150 0.0 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
2 Hb_009615_060 0.0617381466 - - PREDICTED: prolyl endopeptidase-like [Jatropha curcas]
3 Hb_002301_100 0.0766277477 - - hypothetical protein JCGZ_21479 [Jatropha curcas]
4 Hb_012393_030 0.077906765 - - NADP-dependent isocitrate dehydrogenase family protein [Populus trichocarpa]
5 Hb_001221_020 0.0837646528 - - PREDICTED: probable aspartyl aminopeptidase [Jatropha curcas]
6 Hb_005648_010 0.0840828283 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
7 Hb_021576_010 0.0868239996 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
8 Hb_002477_290 0.0868637635 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
9 Hb_003159_050 0.0872628106 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_004096_110 0.0873469658 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
11 Hb_001728_140 0.0875745833 - - -
12 Hb_000841_050 0.0892145838 - - hypothetical protein L484_019972 [Morus notabilis]
13 Hb_000190_090 0.0900906836 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
14 Hb_001828_180 0.0902492154 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
15 Hb_011224_160 0.090326995 transcription factor, rubber biosynthesis TF Family: HSF, Gene Name: Farnesyl diphosphate synthase PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
16 Hb_002686_200 0.0923261228 - - glucosidase II beta subunit, putative [Ricinus communis]
17 Hb_001731_030 0.0932402874 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A-like [Gossypium raimondii]
18 Hb_002093_060 0.0937842646 - - phosphoprotein phosphatase, putative [Ricinus communis]
19 Hb_001269_600 0.0945180315 - - protein phosphatase 2c, putative [Ricinus communis]
20 Hb_004880_150 0.0961176663 - - PREDICTED: uncharacterized protein LOC105632834 [Jatropha curcas]

Gene co-expression network

sample Hb_001493_150 Hb_001493_150 Hb_009615_060 Hb_009615_060 Hb_001493_150--Hb_009615_060 Hb_002301_100 Hb_002301_100 Hb_001493_150--Hb_002301_100 Hb_012393_030 Hb_012393_030 Hb_001493_150--Hb_012393_030 Hb_001221_020 Hb_001221_020 Hb_001493_150--Hb_001221_020 Hb_005648_010 Hb_005648_010 Hb_001493_150--Hb_005648_010 Hb_021576_010 Hb_021576_010 Hb_001493_150--Hb_021576_010 Hb_000548_070 Hb_000548_070 Hb_009615_060--Hb_000548_070 Hb_001728_140 Hb_001728_140 Hb_009615_060--Hb_001728_140 Hb_003159_050 Hb_003159_050 Hb_009615_060--Hb_003159_050 Hb_002631_130 Hb_002631_130 Hb_009615_060--Hb_002631_130 Hb_009615_060--Hb_012393_030 Hb_000398_060 Hb_000398_060 Hb_002301_100--Hb_000398_060 Hb_012733_040 Hb_012733_040 Hb_002301_100--Hb_012733_040 Hb_001828_180 Hb_001828_180 Hb_002301_100--Hb_001828_180 Hb_000363_190 Hb_000363_190 Hb_002301_100--Hb_000363_190 Hb_001242_120 Hb_001242_120 Hb_002301_100--Hb_001242_120 Hb_006059_030 Hb_006059_030 Hb_012393_030--Hb_006059_030 Hb_000841_050 Hb_000841_050 Hb_012393_030--Hb_000841_050 Hb_012393_030--Hb_003159_050 Hb_001195_400 Hb_001195_400 Hb_012393_030--Hb_001195_400 Hb_005601_040 Hb_005601_040 Hb_012393_030--Hb_005601_040 Hb_004880_150 Hb_004880_150 Hb_001221_020--Hb_004880_150 Hb_001221_020--Hb_000841_050 Hb_000025_190 Hb_000025_190 Hb_001221_020--Hb_000025_190 Hb_001221_020--Hb_005648_010 Hb_003776_060 Hb_003776_060 Hb_001221_020--Hb_003776_060 Hb_002093_060 Hb_002093_060 Hb_005648_010--Hb_002093_060 Hb_002357_060 Hb_002357_060 Hb_005648_010--Hb_002357_060 Hb_005648_010--Hb_004880_150 Hb_000115_150 Hb_000115_150 Hb_005648_010--Hb_000115_150 Hb_005648_010--Hb_000025_190 Hb_000120_370 Hb_000120_370 Hb_005648_010--Hb_000120_370 Hb_000979_220 Hb_000979_220 Hb_021576_010--Hb_000979_220 Hb_004096_110 Hb_004096_110 Hb_021576_010--Hb_004096_110 Hb_003777_290 Hb_003777_290 Hb_021576_010--Hb_003777_290 Hb_000327_250 Hb_000327_250 Hb_021576_010--Hb_000327_250 Hb_016347_010 Hb_016347_010 Hb_021576_010--Hb_016347_010 Hb_021576_010--Hb_001828_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.18975 11.5846 21.7006 24.5202 9.29023 8.67843
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.2924 15.3954 15.3164 39.5533 24.92

CAGE analysis