Hb_001493_160

Information

Type -
Description -
Location Contig1493: 119694-122371
Sequence    

Annotation

kegg
ID rcu:RCOM_0417930
description DNA binding protein, putative
nr
ID XP_012068797.1
description PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
swissprot
ID Q9M2D8
description Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1
trembl
ID A0A067KWP4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24630 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001493_160 0.0 - - PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
2 Hb_072997_010 0.2110646763 - - hypothetical protein JCGZ_18743 [Jatropha curcas]
3 Hb_012754_020 0.2189028118 - - PREDICTED: uncharacterized protein LOC104229837 [Nicotiana sylvestris]
4 Hb_001416_170 0.2314844952 - - kinase, putative [Ricinus communis]
5 Hb_055147_020 0.231496899 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
6 Hb_004096_010 0.2379975448 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 40 [Jatropha curcas]
7 Hb_183086_070 0.2442781588 - - PREDICTED: mitochondrial chaperone BCS1-like [Jatropha curcas]
8 Hb_010598_010 0.2456251843 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
9 Hb_007044_220 0.2499540634 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
10 Hb_000046_240 0.2512268575 - - PREDICTED: uncharacterized protein LOC105631837 [Jatropha curcas]
11 Hb_000853_010 0.2518549419 - - Pectinesterase-3 precursor, putative [Ricinus communis]
12 Hb_023278_030 0.2524729659 - - zinc finger protein, putative [Ricinus communis]
13 Hb_003878_020 0.2526839541 - - Epidermis-specific secreted glycoprotein EP1 precursor, putative [Ricinus communis]
14 Hb_001862_160 0.2538736038 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
15 Hb_055440_010 0.2539742733 - - protein binding protein, putative [Ricinus communis]
16 Hb_002092_030 0.2540346069 - - PREDICTED: uncharacterized protein LOC105650668 [Jatropha curcas]
17 Hb_133508_020 0.2560755701 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
18 Hb_015934_100 0.2561484676 - - phospholipid/glycerol acyltransferase family protein [Populus trichocarpa]
19 Hb_000028_490 0.2562869581 - - calmodulin-like protein 6a [Populus trichocarpa]
20 Hb_006834_010 0.2570320985 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001493_160 Hb_001493_160 Hb_072997_010 Hb_072997_010 Hb_001493_160--Hb_072997_010 Hb_012754_020 Hb_012754_020 Hb_001493_160--Hb_012754_020 Hb_001416_170 Hb_001416_170 Hb_001493_160--Hb_001416_170 Hb_055147_020 Hb_055147_020 Hb_001493_160--Hb_055147_020 Hb_004096_010 Hb_004096_010 Hb_001493_160--Hb_004096_010 Hb_183086_070 Hb_183086_070 Hb_001493_160--Hb_183086_070 Hb_055440_010 Hb_055440_010 Hb_072997_010--Hb_055440_010 Hb_072997_010--Hb_004096_010 Hb_001002_090 Hb_001002_090 Hb_072997_010--Hb_001002_090 Hb_010598_010 Hb_010598_010 Hb_072997_010--Hb_010598_010 Hb_009767_030 Hb_009767_030 Hb_072997_010--Hb_009767_030 Hb_001288_020 Hb_001288_020 Hb_072997_010--Hb_001288_020 Hb_000985_070 Hb_000985_070 Hb_012754_020--Hb_000985_070 Hb_003185_090 Hb_003185_090 Hb_012754_020--Hb_003185_090 Hb_000302_210 Hb_000302_210 Hb_012754_020--Hb_000302_210 Hb_164162_010 Hb_164162_010 Hb_012754_020--Hb_164162_010 Hb_000125_220 Hb_000125_220 Hb_012754_020--Hb_000125_220 Hb_000853_010 Hb_000853_010 Hb_001416_170--Hb_000853_010 Hb_006834_010 Hb_006834_010 Hb_001416_170--Hb_006834_010 Hb_001416_170--Hb_055147_020 Hb_000975_130 Hb_000975_130 Hb_001416_170--Hb_000975_130 Hb_004984_020 Hb_004984_020 Hb_001416_170--Hb_004984_020 Hb_001416_170--Hb_055440_010 Hb_000172_310 Hb_000172_310 Hb_055147_020--Hb_000172_310 Hb_055147_020--Hb_000975_130 Hb_004218_220 Hb_004218_220 Hb_055147_020--Hb_004218_220 Hb_096878_010 Hb_096878_010 Hb_055147_020--Hb_096878_010 Hb_000111_120 Hb_000111_120 Hb_055147_020--Hb_000111_120 Hb_004096_010--Hb_010598_010 Hb_001862_160 Hb_001862_160 Hb_004096_010--Hb_001862_160 Hb_001269_120 Hb_001269_120 Hb_004096_010--Hb_001269_120 Hb_004096_010--Hb_055440_010 Hb_004096_010--Hb_009767_030 Hb_127416_010 Hb_127416_010 Hb_183086_070--Hb_127416_010 Hb_000028_490 Hb_000028_490 Hb_183086_070--Hb_000028_490 Hb_002284_080 Hb_002284_080 Hb_183086_070--Hb_002284_080 Hb_003710_020 Hb_003710_020 Hb_183086_070--Hb_003710_020 Hb_007044_220 Hb_007044_220 Hb_183086_070--Hb_007044_220 Hb_080477_080 Hb_080477_080 Hb_183086_070--Hb_080477_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0656787 0.220937 0.259459 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0724226 0.173883 0

CAGE analysis