Hb_001495_060

Information

Type -
Description -
Location Contig1495: 90296-93050
Sequence    

Annotation

kegg
ID pop:POPTR_0013s03740g
description POPTRDRAFT_894520; hypothetical protein
nr
ID XP_012089250.1
description PREDICTED: probable aldo-keto reductase 1 [Jatropha curcas]
swissprot
ID C6TBN2
description Probable aldo-keto reductase 1 OS=Glycine max GN=AKR1 PE=2 SV=1
trembl
ID A0A067JUJ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23488 PE=4 SV=1
Gene Ontology
ID GO:0050236
description probable aldo-keto reductase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12458: 90226-93058
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001495_060 0.0 - - PREDICTED: probable aldo-keto reductase 1 [Jatropha curcas]
2 Hb_000453_210 0.1540596622 - - hypothetical protein PHAVU_006G019800g [Phaseolus vulgaris]
3 Hb_000529_240 0.1775299213 - - -
4 Hb_002685_180 0.1882155102 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
5 Hb_003209_030 0.1942177101 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
6 Hb_001143_010 0.2037751318 - - -
7 Hb_001047_140 0.2145323891 - - -
8 Hb_008667_050 0.2194152289 - - PREDICTED: serine/threonine-protein kinase HT1-like [Malus domestica]
9 Hb_000331_320 0.223250428 - - -
10 Hb_011242_030 0.2233439501 - - -
11 Hb_000179_150 0.2242601827 - - hypothetical protein ZEAMMB73_153699 [Zea mays]
12 Hb_002301_240 0.2484339028 - - auxin-repressed protein-like protein ARP1 [Manihot esculenta]
13 Hb_009139_010 0.2484663276 - - putative Phospholipid-Diacylglycerol acyltransferase [Elaeis guineensis]
14 Hb_001864_030 0.2493081554 - - thioredoxin h [Hevea brasiliensis]
15 Hb_003592_070 0.2514123427 - - -
16 Hb_000086_330 0.2589234664 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]
17 Hb_002835_220 0.2593913512 - - PREDICTED: MATE efflux family protein 7 [Vitis vinifera]
18 Hb_148891_010 0.2630478815 - - -
19 Hb_000445_330 0.2669522106 - - conserved hypothetical protein [Ricinus communis]
20 Hb_008983_010 0.2673476243 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001495_060 Hb_001495_060 Hb_000453_210 Hb_000453_210 Hb_001495_060--Hb_000453_210 Hb_000529_240 Hb_000529_240 Hb_001495_060--Hb_000529_240 Hb_002685_180 Hb_002685_180 Hb_001495_060--Hb_002685_180 Hb_003209_030 Hb_003209_030 Hb_001495_060--Hb_003209_030 Hb_001143_010 Hb_001143_010 Hb_001495_060--Hb_001143_010 Hb_001047_140 Hb_001047_140 Hb_001495_060--Hb_001047_140 Hb_000453_210--Hb_001143_010 Hb_000453_210--Hb_002685_180 Hb_008667_050 Hb_008667_050 Hb_000453_210--Hb_008667_050 Hb_000453_210--Hb_003209_030 Hb_000453_210--Hb_001047_140 Hb_000529_240--Hb_003209_030 Hb_000529_240--Hb_008667_050 Hb_000331_320 Hb_000331_320 Hb_000529_240--Hb_000331_320 Hb_000529_240--Hb_001047_140 Hb_000529_240--Hb_000453_210 Hb_007904_090 Hb_007904_090 Hb_002685_180--Hb_007904_090 Hb_011242_030 Hb_011242_030 Hb_002685_180--Hb_011242_030 Hb_000376_160 Hb_000376_160 Hb_002685_180--Hb_000376_160 Hb_019033_010 Hb_019033_010 Hb_002685_180--Hb_019033_010 Hb_003209_030--Hb_000331_320 Hb_003209_030--Hb_008667_050 Hb_003209_030--Hb_001047_140 Hb_000861_050 Hb_000861_050 Hb_001143_010--Hb_000861_050 Hb_150299_030 Hb_150299_030 Hb_001143_010--Hb_150299_030 Hb_005410_030 Hb_005410_030 Hb_001143_010--Hb_005410_030 Hb_004055_060 Hb_004055_060 Hb_001143_010--Hb_004055_060 Hb_004958_050 Hb_004958_050 Hb_001143_010--Hb_004958_050 Hb_001047_140--Hb_000331_320 Hb_001864_030 Hb_001864_030 Hb_001047_140--Hb_001864_030 Hb_001047_140--Hb_008667_050 Hb_000331_310 Hb_000331_310 Hb_001047_140--Hb_000331_310 Hb_004502_080 Hb_004502_080 Hb_001047_140--Hb_004502_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5963 11.8048 0.375176 0.794517 7.61684 4.23537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.9173 25.1658 0.220245 4.10799 0

CAGE analysis