Hb_001496_020

Information

Type -
Description -
Location Contig1496: 12670-17511
Sequence    

Annotation

kegg
ID brp:103838112
description protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like
nr
ID KHG06557.1
description putative WRKY transcription factor 19 -like protein [Gossypium arboreum]
swissprot
ID -
description -
trembl
ID A0A0B0N1T4
description Putative WRKY transcription factor 19-like protein OS=Gossypium arboreum GN=F383_33626 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001496_020 0.0 - - putative WRKY transcription factor 19 -like protein [Gossypium arboreum]
2 Hb_003297_040 0.178791283 - - Disease resistance protein RPM1, putative [Ricinus communis]
3 Hb_006856_020 0.2309839378 - - -
4 Hb_002003_120 0.2638431265 - - PREDICTED: ubiquitin-like-conjugating enzyme ATG10 isoform X1 [Jatropha curcas]
5 Hb_000832_350 0.2658054188 - - Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis]
6 Hb_000072_040 0.269843487 - - -
7 Hb_033286_020 0.2719912655 - - -
8 Hb_000084_080 0.2800972106 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
9 Hb_138607_010 0.2887383781 - - hypothetical protein RCOM_0725500 [Ricinus communis]
10 Hb_011618_020 0.305789634 - - hypothetical protein OsI_13615 [Oryza sativa Indica Group]
11 Hb_002260_260 0.3080069699 - - hypothetical protein VITISV_037667 [Vitis vinifera]
12 Hb_004228_040 0.3119174311 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
13 Hb_150366_010 0.3127026049 - - JHL22C18.10 [Jatropha curcas]
14 Hb_016834_010 0.318955368 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
15 Hb_031474_020 0.3197878839 - - -
16 Hb_001496_140 0.3339431587 - - -
17 Hb_000363_470 0.3346288406 - - hypothetical protein JCGZ_00950 [Jatropha curcas]
18 Hb_001511_230 0.3383332563 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
19 Hb_000967_030 0.3517522039 - - -
20 Hb_000159_030 0.3523285136 - - putative glycosyltransferase, partial [Aralia elata]

Gene co-expression network

sample Hb_001496_020 Hb_001496_020 Hb_003297_040 Hb_003297_040 Hb_001496_020--Hb_003297_040 Hb_006856_020 Hb_006856_020 Hb_001496_020--Hb_006856_020 Hb_002003_120 Hb_002003_120 Hb_001496_020--Hb_002003_120 Hb_000832_350 Hb_000832_350 Hb_001496_020--Hb_000832_350 Hb_000072_040 Hb_000072_040 Hb_001496_020--Hb_000072_040 Hb_033286_020 Hb_033286_020 Hb_001496_020--Hb_033286_020 Hb_003297_040--Hb_006856_020 Hb_003297_040--Hb_000832_350 Hb_011618_020 Hb_011618_020 Hb_003297_040--Hb_011618_020 Hb_006261_010 Hb_006261_010 Hb_003297_040--Hb_006261_010 Hb_007757_090 Hb_007757_090 Hb_003297_040--Hb_007757_090 Hb_006856_020--Hb_000832_350 Hb_006856_020--Hb_033286_020 Hb_169514_010 Hb_169514_010 Hb_006856_020--Hb_169514_010 Hb_006856_020--Hb_011618_020 Hb_002003_120--Hb_003297_040 Hb_115414_010 Hb_115414_010 Hb_002003_120--Hb_115414_010 Hb_035726_010 Hb_035726_010 Hb_002003_120--Hb_035726_010 Hb_031474_020 Hb_031474_020 Hb_002003_120--Hb_031474_020 Hb_039791_010 Hb_039791_010 Hb_002003_120--Hb_039791_010 Hb_001221_120 Hb_001221_120 Hb_002003_120--Hb_001221_120 Hb_001799_220 Hb_001799_220 Hb_000832_350--Hb_001799_220 Hb_030370_010 Hb_030370_010 Hb_000832_350--Hb_030370_010 Hb_033908_010 Hb_033908_010 Hb_000832_350--Hb_033908_010 Hb_001496_140 Hb_001496_140 Hb_000832_350--Hb_001496_140 Hb_004228_040 Hb_004228_040 Hb_000072_040--Hb_004228_040 Hb_133191_010 Hb_133191_010 Hb_000072_040--Hb_133191_010 Hb_016834_010 Hb_016834_010 Hb_000072_040--Hb_016834_010 Hb_014988_030 Hb_014988_030 Hb_000072_040--Hb_014988_030 Hb_000072_040--Hb_031474_020 Hb_002888_080 Hb_002888_080 Hb_033286_020--Hb_002888_080 Hb_033286_020--Hb_004228_040 Hb_133047_030 Hb_133047_030 Hb_033286_020--Hb_133047_030 Hb_033286_020--Hb_000832_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0389275 0 0 1.83557 1.69502
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 8.80778 3.38198

CAGE analysis