Hb_001496_050

Information

Type -
Description -
Location Contig1496: 46771-55832
Sequence    

Annotation

kegg
ID rcu:RCOM_0759470
description yth domain-containing protein, putative
nr
ID XP_002526452.1
description yth domain-containing protein, putative [Ricinus communis]
swissprot
ID Q4R5D9
description YTH domain-containing family protein 2 OS=Macaca fascicularis GN=YTHDF2 PE=2 SV=1
trembl
ID B9SKD3
description Yth domain-containing protein, putative OS=Ricinus communis GN=RCOM_0759470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001496_050 0.0 - - yth domain-containing protein, putative [Ricinus communis]
2 Hb_001320_020 0.1148121863 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
3 Hb_000968_070 0.1214083242 - - -
4 Hb_062317_020 0.1299339684 - - conserved hypothetical protein [Ricinus communis]
5 Hb_008055_030 0.2027027081 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
6 Hb_000028_380 0.20537252 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
7 Hb_000811_090 0.2106838 - - hypothetical protein VITISV_043745 [Vitis vinifera]
8 Hb_005920_030 0.2111091184 - - putative polyprotein [Oryza sativa Japonica Group]
9 Hb_095937_010 0.2142356475 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
10 Hb_007793_030 0.2180454825 - - OSJNBa0074B10.6 [Oryza sativa Japonica Group]
11 Hb_155423_010 0.221563503 - - -
12 Hb_002447_100 0.2229435409 - - hypothetical protein POPTR_0009s06260g [Populus trichocarpa]
13 Hb_000567_270 0.227720902 - - hypothetical protein L484_017162 [Morus notabilis]
14 Hb_145620_010 0.2308214508 - - hypothetical protein VITISV_019786 [Vitis vinifera]
15 Hb_006237_030 0.2309451882 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_002973_120 0.2310730399 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
17 Hb_040473_010 0.2312071304 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
18 Hb_003994_070 0.2391403806 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
19 Hb_007520_070 0.2392172386 - - PREDICTED: uncharacterized protein LOC105155919 [Sesamum indicum]
20 Hb_003311_020 0.2395935073 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001496_050 Hb_001496_050 Hb_001320_020 Hb_001320_020 Hb_001496_050--Hb_001320_020 Hb_000968_070 Hb_000968_070 Hb_001496_050--Hb_000968_070 Hb_062317_020 Hb_062317_020 Hb_001496_050--Hb_062317_020 Hb_008055_030 Hb_008055_030 Hb_001496_050--Hb_008055_030 Hb_000028_380 Hb_000028_380 Hb_001496_050--Hb_000028_380 Hb_000811_090 Hb_000811_090 Hb_001496_050--Hb_000811_090 Hb_001320_020--Hb_062317_020 Hb_001320_020--Hb_000968_070 Hb_007520_070 Hb_007520_070 Hb_001320_020--Hb_007520_070 Hb_007793_030 Hb_007793_030 Hb_001320_020--Hb_007793_030 Hb_001320_020--Hb_000028_380 Hb_000968_070--Hb_007793_030 Hb_155423_010 Hb_155423_010 Hb_000968_070--Hb_155423_010 Hb_006807_010 Hb_006807_010 Hb_000968_070--Hb_006807_010 Hb_000968_070--Hb_062317_020 Hb_062317_020--Hb_007520_070 Hb_062317_020--Hb_007793_030 Hb_034359_010 Hb_034359_010 Hb_062317_020--Hb_034359_010 Hb_005920_030 Hb_005920_030 Hb_008055_030--Hb_005920_030 Hb_001856_280 Hb_001856_280 Hb_008055_030--Hb_001856_280 Hb_007885_110 Hb_007885_110 Hb_008055_030--Hb_007885_110 Hb_043792_030 Hb_043792_030 Hb_008055_030--Hb_043792_030 Hb_019654_170 Hb_019654_170 Hb_008055_030--Hb_019654_170 Hb_004520_010 Hb_004520_010 Hb_008055_030--Hb_004520_010 Hb_040473_010 Hb_040473_010 Hb_000028_380--Hb_040473_010 Hb_013420_070 Hb_013420_070 Hb_000028_380--Hb_013420_070 Hb_000028_380--Hb_000968_070 Hb_000028_380--Hb_007885_110 Hb_000421_280 Hb_000421_280 Hb_000811_090--Hb_000421_280 Hb_095937_010 Hb_095937_010 Hb_000811_090--Hb_095937_010 Hb_145620_010 Hb_145620_010 Hb_000811_090--Hb_145620_010 Hb_000907_050 Hb_000907_050 Hb_000811_090--Hb_000907_050 Hb_010964_030 Hb_010964_030 Hb_000811_090--Hb_010964_030 Hb_030987_010 Hb_030987_010 Hb_000811_090--Hb_030987_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0191108 0 0.0199 0 0.0201927
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0498557 0.16861

CAGE analysis