Hb_001496_070

Information

Type -
Description -
Location Contig1496: 56342-59989
Sequence    

Annotation

kegg
ID rcu:RCOM_0759490
description bromodomain-containing protein, putative
nr
ID XP_012066661.1
description PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L5C8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00235 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12462: 56141-57439 , PASA_asmbl_12463: 58644-60031 , PASA_asmbl_12464: 58628-59667
cDNA
(Sanger)
(ID:Location)		 009_E24.ab1: 58976-60027

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001496_070 0.0 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
2 Hb_002493_020 0.069227036 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
3 Hb_005901_020 0.0706169825 - - PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1 [Jatropha curcas]
4 Hb_001449_040 0.0715621907 - - PREDICTED: SWR1 complex subunit 2 isoform X2 [Jatropha curcas]
5 Hb_000362_150 0.0753261979 - - PREDICTED: homogentisate 1,2-dioxygenase [Jatropha curcas]
6 Hb_000983_150 0.0813057432 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
7 Hb_002974_060 0.0815114183 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X2 [Jatropha curcas]
8 Hb_172632_080 0.0836418606 - - PREDICTED: uncharacterized protein LOC105141138 isoform X1 [Populus euphratica]
9 Hb_001329_140 0.0858014312 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
10 Hb_001199_100 0.0863993383 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
11 Hb_004306_080 0.0887539706 - - PREDICTED: B-cell receptor-associated protein 31 [Jatropha curcas]
12 Hb_006660_010 0.0922146983 - - PREDICTED: exocyst complex component EXO84C isoform X1 [Jatropha curcas]
13 Hb_009476_040 0.0924363942 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000347_180 0.0927311528 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
15 Hb_000008_290 0.0928569339 - - PREDICTED: protein SAND [Jatropha curcas]
16 Hb_123903_010 0.0929257156 transcription factor TF Family: IWS1 conserved hypothetical protein [Ricinus communis]
17 Hb_000236_310 0.0935132288 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Malus domestica]
18 Hb_003362_070 0.0939387184 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
19 Hb_100215_010 0.0941089728 - - PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X1 [Jatropha curcas]
20 Hb_000785_040 0.0951555842 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]

Gene co-expression network

sample Hb_001496_070 Hb_001496_070 Hb_002493_020 Hb_002493_020 Hb_001496_070--Hb_002493_020 Hb_005901_020 Hb_005901_020 Hb_001496_070--Hb_005901_020 Hb_001449_040 Hb_001449_040 Hb_001496_070--Hb_001449_040 Hb_000362_150 Hb_000362_150 Hb_001496_070--Hb_000362_150 Hb_000983_150 Hb_000983_150 Hb_001496_070--Hb_000983_150 Hb_002974_060 Hb_002974_060 Hb_001496_070--Hb_002974_060 Hb_005679_050 Hb_005679_050 Hb_002493_020--Hb_005679_050 Hb_004102_140 Hb_004102_140 Hb_002493_020--Hb_004102_140 Hb_004228_010 Hb_004228_010 Hb_002493_020--Hb_004228_010 Hb_172632_080 Hb_172632_080 Hb_002493_020--Hb_172632_080 Hb_004306_080 Hb_004306_080 Hb_002493_020--Hb_004306_080 Hb_001199_100 Hb_001199_100 Hb_005901_020--Hb_001199_100 Hb_003253_040 Hb_003253_040 Hb_005901_020--Hb_003253_040 Hb_005901_020--Hb_001449_040 Hb_004032_380 Hb_004032_380 Hb_005901_020--Hb_004032_380 Hb_003294_090 Hb_003294_090 Hb_005901_020--Hb_003294_090 Hb_056691_060 Hb_056691_060 Hb_001449_040--Hb_056691_060 Hb_000008_290 Hb_000008_290 Hb_001449_040--Hb_000008_290 Hb_000613_050 Hb_000613_050 Hb_001449_040--Hb_000613_050 Hb_001343_040 Hb_001343_040 Hb_001449_040--Hb_001343_040 Hb_009529_030 Hb_009529_030 Hb_000362_150--Hb_009529_030 Hb_152202_010 Hb_152202_010 Hb_000362_150--Hb_152202_010 Hb_000004_030 Hb_000004_030 Hb_000362_150--Hb_000004_030 Hb_032050_040 Hb_032050_040 Hb_000362_150--Hb_032050_040 Hb_000362_150--Hb_002493_020 Hb_007904_160 Hb_007904_160 Hb_000983_150--Hb_007904_160 Hb_000367_010 Hb_000367_010 Hb_000983_150--Hb_000367_010 Hb_100215_010 Hb_100215_010 Hb_000983_150--Hb_100215_010 Hb_023480_010 Hb_023480_010 Hb_000983_150--Hb_023480_010 Hb_002131_020 Hb_002131_020 Hb_000983_150--Hb_002131_020 Hb_000983_150--Hb_000008_290 Hb_011716_020 Hb_011716_020 Hb_002974_060--Hb_011716_020 Hb_002551_070 Hb_002551_070 Hb_002974_060--Hb_002551_070 Hb_002600_140 Hb_002600_140 Hb_002974_060--Hb_002600_140 Hb_000446_120 Hb_000446_120 Hb_002974_060--Hb_000446_120 Hb_116929_010 Hb_116929_010 Hb_002974_060--Hb_116929_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.08454 4.32293 1.72299 5.58501 5.9824 8.28012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.86969 2.62292 4.93563 5.68035 6.2328

CAGE analysis