Hb_001496_140

Information

Type -
Description -
Location Contig1496: 109374-110367
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001496_140 0.0 - - -
2 Hb_000832_350 0.2410953923 - - Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis]
3 Hb_001799_220 0.2590014551 transcription factor TF Family: AP2 Ethylene-responsive transcription factor, putative [Ricinus communis]
4 Hb_002123_030 0.2642406559 - - hypothetical protein VITISV_003767 [Vitis vinifera]
5 Hb_016834_010 0.2762962197 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
6 Hb_030370_010 0.2768429044 - - PREDICTED: uncharacterized protein LOC104896222 [Beta vulgaris subsp. vulgaris]
7 Hb_000038_050 0.27891602 - - -
8 Hb_092650_010 0.2845658891 - - Uncharacterized protein TCM_017953 [Theobroma cacao]
9 Hb_012253_020 0.2883647187 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_020411_010 0.2920907179 - - phosphoprotein phosphatase, putative [Ricinus communis]
11 Hb_002260_260 0.2936950829 - - hypothetical protein VITISV_037667 [Vitis vinifera]
12 Hb_012305_080 0.2939054156 - - -
13 Hb_003297_040 0.3013830709 - - Disease resistance protein RPM1, putative [Ricinus communis]
14 Hb_023161_030 0.3042298493 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
15 Hb_000072_040 0.3078587098 - - -
16 Hb_076226_010 0.3079848856 - - hypothetical protein VITISV_030432 [Vitis vinifera]
17 Hb_033908_010 0.3085468833 - - -
18 Hb_166631_010 0.3117790951 - - PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
19 Hb_033286_020 0.3128630523 - - -
20 Hb_006856_020 0.3161278599 - - -

Gene co-expression network

sample Hb_001496_140 Hb_001496_140 Hb_000832_350 Hb_000832_350 Hb_001496_140--Hb_000832_350 Hb_001799_220 Hb_001799_220 Hb_001496_140--Hb_001799_220 Hb_002123_030 Hb_002123_030 Hb_001496_140--Hb_002123_030 Hb_016834_010 Hb_016834_010 Hb_001496_140--Hb_016834_010 Hb_030370_010 Hb_030370_010 Hb_001496_140--Hb_030370_010 Hb_000038_050 Hb_000038_050 Hb_001496_140--Hb_000038_050 Hb_003297_040 Hb_003297_040 Hb_000832_350--Hb_003297_040 Hb_006856_020 Hb_006856_020 Hb_000832_350--Hb_006856_020 Hb_000832_350--Hb_001799_220 Hb_000832_350--Hb_030370_010 Hb_033908_010 Hb_033908_010 Hb_000832_350--Hb_033908_010 Hb_001799_220--Hb_030370_010 Hb_001799_220--Hb_002123_030 Hb_012253_020 Hb_012253_020 Hb_001799_220--Hb_012253_020 Hb_005405_010 Hb_005405_010 Hb_001799_220--Hb_005405_010 Hb_000599_070 Hb_000599_070 Hb_001799_220--Hb_000599_070 Hb_002123_030--Hb_012253_020 Hb_002123_030--Hb_030370_010 Hb_153665_010 Hb_153665_010 Hb_002123_030--Hb_153665_010 Hb_002123_030--Hb_000599_070 Hb_009042_010 Hb_009042_010 Hb_002123_030--Hb_009042_010 Hb_020411_010 Hb_020411_010 Hb_016834_010--Hb_020411_010 Hb_002456_020 Hb_002456_020 Hb_016834_010--Hb_002456_020 Hb_000072_040 Hb_000072_040 Hb_016834_010--Hb_000072_040 Hb_092650_010 Hb_092650_010 Hb_016834_010--Hb_092650_010 Hb_002260_260 Hb_002260_260 Hb_016834_010--Hb_002260_260 Hb_030370_010--Hb_012253_020 Hb_030370_010--Hb_000599_070 Hb_030370_010--Hb_009042_010 Hb_188450_010 Hb_188450_010 Hb_030370_010--Hb_188450_010 Hb_000038_050--Hb_002260_260 Hb_023161_030 Hb_023161_030 Hb_000038_050--Hb_023161_030 Hb_189003_030 Hb_189003_030 Hb_000038_050--Hb_189003_030 Hb_017687_010 Hb_017687_010 Hb_000038_050--Hb_017687_010 Hb_028751_020 Hb_028751_020 Hb_000038_050--Hb_028751_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0686813 0.265436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0788665 0.062002 0 0.529347 0.737406

CAGE analysis