Hb_001498_030

Information

Type -
Description -
Location Contig1498: 15555-19910
Sequence    

Annotation

kegg
ID pop:POPTR_0006s04620g
description POPTRDRAFT_652677; eukaryotic translation initiation factor 3E family protein
nr
ID XP_011048096.1
description PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
swissprot
ID B4HK67
description Eukaryotic translation initiation factor 3 subunit E OS=Drosophila sechellia GN=eIF3-S6 PE=3 SV=2
trembl
ID A9PHY6
description Eukaryotic translation initiation factor 3 subunit E OS=Populus trichocarpa GN=POPTR_0006s04620g PE=2 SV=1
Gene Ontology
ID GO:0005852
description eukaryotic translation initiation factor 3 subunit e

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12478: 15566-19941 , PASA_asmbl_12479: 17453-17865 , PASA_asmbl_12480: 17228-17448
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001498_030 0.0 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
2 Hb_002133_030 0.067362769 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
3 Hb_005144_040 0.0708429051 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
4 Hb_001969_040 0.0725024498 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
5 Hb_005725_070 0.0728326501 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004724_360 0.0857620832 - - OTU-like cysteine protease family protein [Populus trichocarpa]
7 Hb_042083_070 0.0871300303 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
8 Hb_004032_350 0.0892371583 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
9 Hb_000165_130 0.0904360786 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
10 Hb_001408_090 0.090679657 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
11 Hb_004324_280 0.0907352098 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
12 Hb_003384_030 0.091101243 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
13 Hb_000152_890 0.0915051433 - - hypothetical protein JCGZ_26265 [Jatropha curcas]
14 Hb_000367_290 0.09165173 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
15 Hb_000462_150 0.0916753094 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
16 Hb_000001_180 0.0917379561 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
17 Hb_023020_060 0.09173852 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
18 Hb_018663_020 0.0929488063 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
19 Hb_000327_310 0.0932055613 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
20 Hb_005314_010 0.0935420277 - - nucleotide binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001498_030 Hb_001498_030 Hb_002133_030 Hb_002133_030 Hb_001498_030--Hb_002133_030 Hb_005144_040 Hb_005144_040 Hb_001498_030--Hb_005144_040 Hb_001969_040 Hb_001969_040 Hb_001498_030--Hb_001969_040 Hb_005725_070 Hb_005725_070 Hb_001498_030--Hb_005725_070 Hb_004724_360 Hb_004724_360 Hb_001498_030--Hb_004724_360 Hb_042083_070 Hb_042083_070 Hb_001498_030--Hb_042083_070 Hb_023020_060 Hb_023020_060 Hb_002133_030--Hb_023020_060 Hb_003125_060 Hb_003125_060 Hb_002133_030--Hb_003125_060 Hb_002133_030--Hb_004724_360 Hb_000327_310 Hb_000327_310 Hb_002133_030--Hb_000327_310 Hb_000343_210 Hb_000343_210 Hb_002133_030--Hb_000343_210 Hb_002270_010 Hb_002270_010 Hb_005144_040--Hb_002270_010 Hb_000076_290 Hb_000076_290 Hb_005144_040--Hb_000076_290 Hb_000640_210 Hb_000640_210 Hb_005144_040--Hb_000640_210 Hb_000174_200 Hb_000174_200 Hb_005144_040--Hb_000174_200 Hb_009404_010 Hb_009404_010 Hb_005144_040--Hb_009404_010 Hb_000462_150 Hb_000462_150 Hb_001969_040--Hb_000462_150 Hb_000186_280 Hb_000186_280 Hb_001969_040--Hb_000186_280 Hb_003384_030 Hb_003384_030 Hb_001969_040--Hb_003384_030 Hb_018663_020 Hb_018663_020 Hb_001969_040--Hb_018663_020 Hb_004324_280 Hb_004324_280 Hb_001969_040--Hb_004324_280 Hb_002818_040 Hb_002818_040 Hb_001969_040--Hb_002818_040 Hb_012977_010 Hb_012977_010 Hb_005725_070--Hb_012977_010 Hb_002025_140 Hb_002025_140 Hb_005725_070--Hb_002025_140 Hb_005725_070--Hb_002818_040 Hb_005314_010 Hb_005314_010 Hb_005725_070--Hb_005314_010 Hb_024399_010 Hb_024399_010 Hb_005725_070--Hb_024399_010 Hb_000076_080 Hb_000076_080 Hb_004724_360--Hb_000076_080 Hb_004724_360--Hb_000327_310 Hb_001504_160 Hb_001504_160 Hb_004724_360--Hb_001504_160 Hb_000684_420 Hb_000684_420 Hb_004724_360--Hb_000684_420 Hb_000001_180 Hb_000001_180 Hb_004724_360--Hb_000001_180 Hb_005295_040 Hb_005295_040 Hb_004724_360--Hb_005295_040 Hb_002725_070 Hb_002725_070 Hb_042083_070--Hb_002725_070 Hb_042083_070--Hb_005295_040 Hb_042083_070--Hb_000462_150 Hb_005914_230 Hb_005914_230 Hb_042083_070--Hb_005914_230 Hb_042083_070--Hb_003384_030 Hb_004310_060 Hb_004310_060 Hb_042083_070--Hb_004310_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
420.783 147.639 64.1479 67.3157 338.583 371.252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
119.771 103.652 135.47 76.2587 27.2366

CAGE analysis