Hb_001499_070

Information

Type -
Description -
Location Contig1499: 143963-185164
Sequence    

Annotation

kegg
ID pop:POPTR_0010s25730g
description POPTRDRAFT_725300; an N-terminal calmodulin binding autoinhibitory domain-containing family protein
nr
ID XP_012076073.1
description PREDICTED: calcium-transporting ATPase 9, plasma membrane-type isoform X1 [Jatropha curcas]
swissprot
ID Q9LU41
description Calcium-transporting ATPase 9, plasma membrane-type OS=Arabidopsis thaliana GN=ACA9 PE=2 SV=2
trembl
ID A0A067KHF4
description Calcium-transporting ATPase OS=Jatropha curcas GN=JCGZ_11914 PE=3 SV=1
Gene Ontology
ID GO:0005886
description calcium-transporting atpase plasma membrane-type isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12483: 144130-185027 , PASA_asmbl_12484: 171049-171330
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001499_070 0.0 - - PREDICTED: calcium-transporting ATPase 9, plasma membrane-type isoform X1 [Jatropha curcas]
2 Hb_187005_010 0.0522795359 transcription factor TF Family: MYB-related PREDICTED: 1-phosphatidylinositol 3-phosphate 5-kinase [Jatropha curcas]
3 Hb_000175_270 0.0842368882 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
4 Hb_007290_070 0.0876637448 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
5 Hb_001514_240 0.0921892017 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
6 Hb_013968_010 0.1010448843 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
7 Hb_001408_020 0.1054471461 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
8 Hb_000477_070 0.1064111348 - - histone h2a, putative [Ricinus communis]
9 Hb_005183_140 0.1077233452 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
10 Hb_002383_050 0.1079187663 - - PREDICTED: uncharacterized protein LOC105628744 [Jatropha curcas]
11 Hb_000340_360 0.1079852244 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
12 Hb_006794_020 0.1126406724 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
13 Hb_004346_040 0.1161437077 - - hypothetical protein POPTR_0016s06630g [Populus trichocarpa]
14 Hb_002259_220 0.1194658489 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
15 Hb_014006_010 0.1204436756 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
16 Hb_000260_160 0.1243011299 transcription factor TF Family: GNAT ATP binding protein, putative [Ricinus communis]
17 Hb_002804_010 0.1247598835 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
18 Hb_083078_010 0.1249936186 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
19 Hb_011188_010 0.1265762427 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
20 Hb_000035_060 0.1279235716 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001499_070 Hb_001499_070 Hb_187005_010 Hb_187005_010 Hb_001499_070--Hb_187005_010 Hb_000175_270 Hb_000175_270 Hb_001499_070--Hb_000175_270 Hb_007290_070 Hb_007290_070 Hb_001499_070--Hb_007290_070 Hb_001514_240 Hb_001514_240 Hb_001499_070--Hb_001514_240 Hb_013968_010 Hb_013968_010 Hb_001499_070--Hb_013968_010 Hb_001408_020 Hb_001408_020 Hb_001499_070--Hb_001408_020 Hb_187005_010--Hb_000175_270 Hb_187005_010--Hb_001514_240 Hb_187005_010--Hb_007290_070 Hb_187005_010--Hb_001408_020 Hb_002804_010 Hb_002804_010 Hb_187005_010--Hb_002804_010 Hb_000221_180 Hb_000221_180 Hb_000175_270--Hb_000221_180 Hb_014006_010 Hb_014006_010 Hb_000175_270--Hb_014006_010 Hb_019863_060 Hb_019863_060 Hb_000175_270--Hb_019863_060 Hb_000340_360 Hb_000340_360 Hb_000175_270--Hb_000340_360 Hb_007290_070--Hb_001408_020 Hb_083078_010 Hb_083078_010 Hb_007290_070--Hb_083078_010 Hb_000477_070 Hb_000477_070 Hb_007290_070--Hb_000477_070 Hb_005214_070 Hb_005214_070 Hb_007290_070--Hb_005214_070 Hb_026698_020 Hb_026698_020 Hb_001514_240--Hb_026698_020 Hb_002259_220 Hb_002259_220 Hb_001514_240--Hb_002259_220 Hb_009449_100 Hb_009449_100 Hb_001514_240--Hb_009449_100 Hb_001514_240--Hb_013968_010 Hb_001821_060 Hb_001821_060 Hb_013968_010--Hb_001821_060 Hb_011188_010 Hb_011188_010 Hb_013968_010--Hb_011188_010 Hb_002383_050 Hb_002383_050 Hb_013968_010--Hb_002383_050 Hb_003226_090 Hb_003226_090 Hb_013968_010--Hb_003226_090 Hb_004346_040 Hb_004346_040 Hb_013968_010--Hb_004346_040 Hb_009078_020 Hb_009078_020 Hb_001408_020--Hb_009078_020 Hb_000732_230 Hb_000732_230 Hb_001408_020--Hb_000732_230 Hb_002809_160 Hb_002809_160 Hb_001408_020--Hb_002809_160 Hb_000227_320 Hb_000227_320 Hb_001408_020--Hb_000227_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.06229 53.4524 47.2071 23.1813 8.69169 8.23346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.14447 4.06913 5.50428 25.161 50.214

CAGE analysis