Hb_001500_040

Information

Type rubber biosynthesis
Description Gene Name: Pyruvate dehydrogenase
Location Contig1500: 32492-37385
Sequence    

Annotation

kegg
ID rcu:RCOM_1437610
description pyruvate dehydrogenase, putative (EC:1.2.4.1)
nr
ID XP_012088757.1
description PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
swissprot
ID Q6Z1G7
description Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0536000 PE=2 SV=1
trembl
ID A0A067JTH6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23123 PE=4 SV=1
Gene Ontology
ID GO:0005730
description pyruvate dehydrogenase e1 component subunit beta- mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12524: 36912-42909
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001500_040 0.0 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
2 Hb_006400_060 0.0819316673 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X1 [Jatropha curcas]
3 Hb_001269_550 0.0886751558 - - hypothetical protein POPTR_0001s03510g [Populus trichocarpa]
4 Hb_001959_210 0.0907114561 - - PREDICTED: uncharacterized protein LOC105638438 [Jatropha curcas]
5 Hb_002016_110 0.0942304494 - - transducin family protein [Populus trichocarpa]
6 Hb_000483_200 0.0949924651 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
7 Hb_006915_050 0.0977743268 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
8 Hb_148209_110 0.101062489 - - putative polyol transported protein 2 [Hevea brasiliensis]
9 Hb_000635_220 0.1029918349 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]
10 Hb_006400_030 0.1039101998 - - hypothetical protein OsI_01237 [Oryza sativa Indica Group]
11 Hb_003893_010 0.1071647159 - - hypothetical protein M569_16374 [Genlisea aurea]
12 Hb_003106_060 0.1075428177 - - hypothetical protein POPTR_0015s08140g [Populus trichocarpa]
13 Hb_000291_110 0.1084701578 - - eukaryotic translation initiation factor [Hevea brasiliensis]
14 Hb_007044_140 0.1104183209 - - PREDICTED: translation initiation factor eIF-2B subunit delta [Jatropha curcas]
15 Hb_000010_470 0.1112796663 - - Galactose oxidase/kelch repeat superfamily protein isoform 2 [Theobroma cacao]
16 Hb_000051_110 0.1124645038 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001604_010 0.1131031829 - - 14-3-3 protein, putative [Ricinus communis]
18 Hb_000206_250 0.1144879783 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
19 Hb_000152_820 0.1151914083 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
20 Hb_001975_160 0.1152628885 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001500_040 Hb_001500_040 Hb_006400_060 Hb_006400_060 Hb_001500_040--Hb_006400_060 Hb_001269_550 Hb_001269_550 Hb_001500_040--Hb_001269_550 Hb_001959_210 Hb_001959_210 Hb_001500_040--Hb_001959_210 Hb_002016_110 Hb_002016_110 Hb_001500_040--Hb_002016_110 Hb_000483_200 Hb_000483_200 Hb_001500_040--Hb_000483_200 Hb_006915_050 Hb_006915_050 Hb_001500_040--Hb_006915_050 Hb_006400_060--Hb_000483_200 Hb_000808_230 Hb_000808_230 Hb_006400_060--Hb_000808_230 Hb_003032_040 Hb_003032_040 Hb_006400_060--Hb_003032_040 Hb_002079_010 Hb_002079_010 Hb_006400_060--Hb_002079_010 Hb_006400_060--Hb_002016_110 Hb_006400_030 Hb_006400_030 Hb_006400_060--Hb_006400_030 Hb_002496_030 Hb_002496_030 Hb_001269_550--Hb_002496_030 Hb_019654_190 Hb_019654_190 Hb_001269_550--Hb_019654_190 Hb_000776_110 Hb_000776_110 Hb_001269_550--Hb_000776_110 Hb_000152_820 Hb_000152_820 Hb_001269_550--Hb_000152_820 Hb_001269_550--Hb_006400_060 Hb_001269_550--Hb_002016_110 Hb_001009_170 Hb_001009_170 Hb_001959_210--Hb_001009_170 Hb_001959_210--Hb_000483_200 Hb_001959_210--Hb_006400_060 Hb_127552_030 Hb_127552_030 Hb_001959_210--Hb_127552_030 Hb_001959_210--Hb_006400_030 Hb_024185_020 Hb_024185_020 Hb_001959_210--Hb_024185_020 Hb_002016_110--Hb_006915_050 Hb_002026_180 Hb_002026_180 Hb_002016_110--Hb_002026_180 Hb_007441_120 Hb_007441_120 Hb_002016_110--Hb_007441_120 Hb_005663_060 Hb_005663_060 Hb_002016_110--Hb_005663_060 Hb_189003_080 Hb_189003_080 Hb_002016_110--Hb_189003_080 Hb_000030_300 Hb_000030_300 Hb_002016_110--Hb_000030_300 Hb_007426_030 Hb_007426_030 Hb_000483_200--Hb_007426_030 Hb_000483_200--Hb_006400_030 Hb_000483_200--Hb_003032_040 Hb_000483_200--Hb_002016_110 Hb_008695_210 Hb_008695_210 Hb_006915_050--Hb_008695_210 Hb_000754_040 Hb_000754_040 Hb_006915_050--Hb_000754_040 Hb_000111_360 Hb_000111_360 Hb_006915_050--Hb_000111_360 Hb_000907_080 Hb_000907_080 Hb_006915_050--Hb_000907_080 Hb_006915_050--Hb_189003_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.6117 10.4574 4.99593 4.66844 22.6525 19.1927
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.1776 15.9086 30.3072 21.9531 11.1164

CAGE analysis