Hb_001500_050

Information

Type transcription factor
Description TF Family: NAC
Location Contig1500: 51210-52871
Sequence    

Annotation

kegg
ID rcu:RCOM_1437600
description NAC domain-containing protein, putative
nr
ID AHF27223.1
description NAC transcription factor [Hevea brasiliensis]
swissprot
ID A0SPJ6
description NAC transcription factor NAM-B2 OS=Triticum turgidum subsp. durum GN=NAM-B2 PE=2 SV=1
trembl
ID A0A059SWR9
description NAC transcription factor OS=Hevea brasiliensis GN=NAC2 PE=2 SV=1
Gene Ontology
ID GO:0005634
description no apical meristem family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12525: 51154-52689 , PASA_asmbl_12526: 51046-52485
cDNA
(Sanger)
(ID:Location)		 049_F20.ab1: 51827-52689

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001500_050 0.0 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
2 Hb_000044_040 0.0725580781 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
3 Hb_011344_160 0.0799561412 - - PREDICTED: primary amine oxidase [Jatropha curcas]
4 Hb_007803_060 0.0917128828 - - PREDICTED: uncharacterized protein LOC105632794 [Jatropha curcas]
5 Hb_000009_090 0.0928320627 transcription factor TF Family: bZIP G-box-binding factor, putative [Ricinus communis]
6 Hb_002022_060 0.0932645841 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
7 Hb_006373_010 0.0935967163 - - Potassium transporter 11 [Gossypium arboreum]
8 Hb_023480_010 0.0937828758 - - cellular nucleic acid binding protein, putative [Ricinus communis]
9 Hb_005054_230 0.0945860307 - - PREDICTED: wiskott-Aldrich syndrome protein family member 2 [Jatropha curcas]
10 Hb_005993_050 0.0951692634 - - Protein AFR, putative [Ricinus communis]
11 Hb_007441_130 0.095340832 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_021443_040 0.096121869 - - acc synthase, putative [Ricinus communis]
13 Hb_000683_070 0.0987582318 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
14 Hb_000544_090 0.0998536846 - - PREDICTED: golgin candidate 2 [Jatropha curcas]
15 Hb_000363_240 0.1002940261 - - PREDICTED: beta-(1,2)-xylosyltransferase [Jatropha curcas]
16 Hb_003929_110 0.1030561178 - - PREDICTED: probable GTP diphosphokinase CRSH, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_011609_140 0.1032223174 - - hypothetical protein JCGZ_12974 [Jatropha curcas]
18 Hb_005503_040 0.1034691037 - - PREDICTED: AMP deaminase [Jatropha curcas]
19 Hb_003680_150 0.1054506207 - - srpk, putative [Ricinus communis]
20 Hb_005779_080 0.1054894817 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001500_050 Hb_001500_050 Hb_000044_040 Hb_000044_040 Hb_001500_050--Hb_000044_040 Hb_011344_160 Hb_011344_160 Hb_001500_050--Hb_011344_160 Hb_007803_060 Hb_007803_060 Hb_001500_050--Hb_007803_060 Hb_000009_090 Hb_000009_090 Hb_001500_050--Hb_000009_090 Hb_002022_060 Hb_002022_060 Hb_001500_050--Hb_002022_060 Hb_006373_010 Hb_006373_010 Hb_001500_050--Hb_006373_010 Hb_000134_270 Hb_000134_270 Hb_000044_040--Hb_000134_270 Hb_007441_130 Hb_007441_130 Hb_000044_040--Hb_007441_130 Hb_001268_280 Hb_001268_280 Hb_000044_040--Hb_001268_280 Hb_021443_040 Hb_021443_040 Hb_000044_040--Hb_021443_040 Hb_004097_070 Hb_004097_070 Hb_000044_040--Hb_004097_070 Hb_011344_160--Hb_007441_130 Hb_001511_240 Hb_001511_240 Hb_011344_160--Hb_001511_240 Hb_011344_160--Hb_006373_010 Hb_011344_160--Hb_000044_040 Hb_023480_010 Hb_023480_010 Hb_011344_160--Hb_023480_010 Hb_009620_050 Hb_009620_050 Hb_007803_060--Hb_009620_050 Hb_000107_400 Hb_000107_400 Hb_007803_060--Hb_000107_400 Hb_116349_030 Hb_116349_030 Hb_007803_060--Hb_116349_030 Hb_000879_160 Hb_000879_160 Hb_007803_060--Hb_000879_160 Hb_000563_640 Hb_000563_640 Hb_007803_060--Hb_000563_640 Hb_003794_010 Hb_003794_010 Hb_000009_090--Hb_003794_010 Hb_000160_210 Hb_000160_210 Hb_000009_090--Hb_000160_210 Hb_005993_050 Hb_005993_050 Hb_000009_090--Hb_005993_050 Hb_007007_060 Hb_007007_060 Hb_000009_090--Hb_007007_060 Hb_000853_230 Hb_000853_230 Hb_000009_090--Hb_000853_230 Hb_005054_230 Hb_005054_230 Hb_000009_090--Hb_005054_230 Hb_001377_320 Hb_001377_320 Hb_002022_060--Hb_001377_320 Hb_007904_120 Hb_007904_120 Hb_002022_060--Hb_007904_120 Hb_002022_060--Hb_007007_060 Hb_002022_060--Hb_003794_010 Hb_002022_060--Hb_000009_090 Hb_162286_010 Hb_162286_010 Hb_002022_060--Hb_162286_010 Hb_011609_140 Hb_011609_140 Hb_006373_010--Hb_011609_140 Hb_006373_010--Hb_001511_240 Hb_009193_120 Hb_009193_120 Hb_006373_010--Hb_009193_120 Hb_007083_030 Hb_007083_030 Hb_006373_010--Hb_007083_030 Hb_006373_010--Hb_000044_040 Hb_006373_010--Hb_021443_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
183.485 114.056 74.8343 101.228 115.352 108.616
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
128.944 51.7698 73.8171 73.1793 113.386

CAGE analysis