Hb_001500_060

Information

Type transcription factor
Description TF Family: C3H
Location Contig1500: 65192-72478
Sequence    

Annotation

kegg
ID rcu:RCOM_1437550
description nucleic acid binding protein, putative
nr
ID XP_012088761.1
description PREDICTED: zinc finger CCCH domain-containing protein ZFN-like [Jatropha curcas]
swissprot
ID Q9SWF9
description Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum PE=2 SV=1
trembl
ID A0A067JKG8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23126 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein zfn-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12530: 65259-72127 , PASA_asmbl_12531: 69657-69888 , PASA_asmbl_12532: 69071-69508 , PASA_asmbl_12533: 69928-70136
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001500_060 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein ZFN-like [Jatropha curcas]
2 Hb_006275_020 0.0646729345 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]
3 Hb_003531_080 0.080995148 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
4 Hb_000340_420 0.0810000476 - - PREDICTED: LEC14B protein isoform X2 [Jatropha curcas]
5 Hb_000120_130 0.0856255487 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
6 Hb_001761_120 0.0878364488 - - hypothetical protein JCGZ_22564 [Jatropha curcas]
7 Hb_000227_270 0.0913400978 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X1 [Jatropha curcas]
8 Hb_000331_680 0.0947734332 - - Protein bem46, putative [Ricinus communis]
9 Hb_007290_030 0.0957232457 transcription factor TF Family: bZIP PREDICTED: uncharacterized protein LOC105629473 [Jatropha curcas]
10 Hb_013358_040 0.0958548125 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
11 Hb_000861_080 0.0962583415 - - PREDICTED: protein ELC-like [Jatropha curcas]
12 Hb_000077_140 0.0968191024 - - structural constituent of cell wall, putative [Ricinus communis]
13 Hb_007007_120 0.0974742172 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
14 Hb_002234_180 0.098697682 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003894_120 0.0991012025 - - PREDICTED: uncharacterized protein LOC105643110 [Jatropha curcas]
16 Hb_000015_170 0.1030112068 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002820_030 0.1030330647 - - PREDICTED: uncharacterized protein LOC105638922 [Jatropha curcas]
18 Hb_002073_200 0.1045058152 - - Phosphatase 2A-2 [Theobroma cacao]
19 Hb_000061_030 0.1050727892 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
20 Hb_000069_310 0.105175302 - - ubiquitin ligase [Cucumis melo subsp. melo]

Gene co-expression network

sample Hb_001500_060 Hb_001500_060 Hb_006275_020 Hb_006275_020 Hb_001500_060--Hb_006275_020 Hb_003531_080 Hb_003531_080 Hb_001500_060--Hb_003531_080 Hb_000340_420 Hb_000340_420 Hb_001500_060--Hb_000340_420 Hb_000120_130 Hb_000120_130 Hb_001500_060--Hb_000120_130 Hb_001761_120 Hb_001761_120 Hb_001500_060--Hb_001761_120 Hb_000227_270 Hb_000227_270 Hb_001500_060--Hb_000227_270 Hb_006275_020--Hb_000120_130 Hb_000015_170 Hb_000015_170 Hb_006275_020--Hb_000015_170 Hb_000103_340 Hb_000103_340 Hb_006275_020--Hb_000103_340 Hb_000061_030 Hb_000061_030 Hb_006275_020--Hb_000061_030 Hb_006275_020--Hb_001761_120 Hb_003531_080--Hb_001761_120 Hb_001472_060 Hb_001472_060 Hb_003531_080--Hb_001472_060 Hb_170416_010 Hb_170416_010 Hb_003531_080--Hb_170416_010 Hb_007007_120 Hb_007007_120 Hb_003531_080--Hb_007007_120 Hb_003531_080--Hb_000340_420 Hb_007290_030 Hb_007290_030 Hb_003531_080--Hb_007290_030 Hb_132840_110 Hb_132840_110 Hb_000340_420--Hb_132840_110 Hb_000340_420--Hb_007007_120 Hb_001789_190 Hb_001789_190 Hb_000340_420--Hb_001789_190 Hb_000340_420--Hb_007290_030 Hb_000214_050 Hb_000214_050 Hb_000340_420--Hb_000214_050 Hb_000120_130--Hb_000015_170 Hb_000861_080 Hb_000861_080 Hb_000120_130--Hb_000861_080 Hb_000808_030 Hb_000808_030 Hb_000120_130--Hb_000808_030 Hb_003747_100 Hb_003747_100 Hb_000120_130--Hb_003747_100 Hb_002783_040 Hb_002783_040 Hb_000120_130--Hb_002783_040 Hb_001761_120--Hb_170416_010 Hb_001761_120--Hb_007290_030 Hb_004052_080 Hb_004052_080 Hb_001761_120--Hb_004052_080 Hb_000339_040 Hb_000339_040 Hb_001761_120--Hb_000339_040 Hb_001761_120--Hb_000103_340 Hb_000227_270--Hb_007290_030 Hb_000352_350 Hb_000352_350 Hb_000227_270--Hb_000352_350 Hb_017214_040 Hb_017214_040 Hb_000227_270--Hb_017214_040 Hb_023226_070 Hb_023226_070 Hb_000227_270--Hb_023226_070 Hb_004943_030 Hb_004943_030 Hb_000227_270--Hb_004943_030 Hb_000086_500 Hb_000086_500 Hb_000227_270--Hb_000086_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.2831 41.4484 43.5613 30.2514 17.3961 27.6012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.2514 21.6348 30.8918 12.6845 29.2888

CAGE analysis