Hb_001500_080

Information

Type -
Description -
Location Contig1500: 88117-93029
Sequence    

Annotation

kegg
ID rcu:RCOM_1437520
description hypothetical protein
nr
ID XP_012088765.1
description PREDICTED: uncharacterized protein LOC105647337 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTH9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23128 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12537: 88069-93034
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001500_080 0.0 - - PREDICTED: uncharacterized protein LOC105647337 isoform X1 [Jatropha curcas]
2 Hb_009693_010 0.0922876334 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Gossypium raimondii]
3 Hb_000934_240 0.1031913099 - - PREDICTED: peroxidase 13 [Jatropha curcas]
4 Hb_000880_040 0.1049006764 - - -
5 Hb_000260_750 0.1075389925 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
6 Hb_004832_010 0.1089341661 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002851_070 0.1182044308 - - PREDICTED: uncharacterized protein LOC105646410 [Jatropha curcas]
8 Hb_019570_010 0.1190599786 - - lyase, putative [Ricinus communis]
9 Hb_006266_010 0.1192793826 - - unnamed protein product [Vitis vinifera]
10 Hb_004446_060 0.1215210145 - - neutral/alkaline invertase [Manihot esculenta]
11 Hb_003592_060 0.124882431 - - hypothetical protein F383_11017 [Gossypium arboreum]
12 Hb_007007_130 0.1305127741 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
13 Hb_000152_770 0.1315489198 - - PREDICTED: dynein light chain, cytoplasmic-like [Jatropha curcas]
14 Hb_004602_010 0.1317709376 - - PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]
15 Hb_009102_010 0.132046811 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_004855_080 0.1333962955 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
17 Hb_006615_220 0.1354644388 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X2 [Jatropha curcas]
18 Hb_000189_160 0.1361873386 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
19 Hb_000947_010 0.1362127006 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
20 Hb_078582_010 0.1366099068 - - hypothetical protein POPTR_0005s01620g [Populus trichocarpa]

Gene co-expression network

sample Hb_001500_080 Hb_001500_080 Hb_009693_010 Hb_009693_010 Hb_001500_080--Hb_009693_010 Hb_000934_240 Hb_000934_240 Hb_001500_080--Hb_000934_240 Hb_000880_040 Hb_000880_040 Hb_001500_080--Hb_000880_040 Hb_000260_750 Hb_000260_750 Hb_001500_080--Hb_000260_750 Hb_004832_010 Hb_004832_010 Hb_001500_080--Hb_004832_010 Hb_002851_070 Hb_002851_070 Hb_001500_080--Hb_002851_070 Hb_009693_010--Hb_000880_040 Hb_003592_060 Hb_003592_060 Hb_009693_010--Hb_003592_060 Hb_009693_010--Hb_002851_070 Hb_006266_010 Hb_006266_010 Hb_009693_010--Hb_006266_010 Hb_000365_440 Hb_000365_440 Hb_009693_010--Hb_000365_440 Hb_000152_770 Hb_000152_770 Hb_000934_240--Hb_000152_770 Hb_000934_240--Hb_003592_060 Hb_000934_240--Hb_009693_010 Hb_004446_060 Hb_004446_060 Hb_000934_240--Hb_004446_060 Hb_000934_240--Hb_002851_070 Hb_000880_040--Hb_000260_750 Hb_000880_040--Hb_000365_440 Hb_001244_070 Hb_001244_070 Hb_000880_040--Hb_001244_070 Hb_170023_010 Hb_170023_010 Hb_000880_040--Hb_170023_010 Hb_000880_040--Hb_002851_070 Hb_004324_320 Hb_004324_320 Hb_000260_750--Hb_004324_320 Hb_009102_010 Hb_009102_010 Hb_000260_750--Hb_009102_010 Hb_078582_010 Hb_078582_010 Hb_000260_750--Hb_078582_010 Hb_002601_140 Hb_002601_140 Hb_000260_750--Hb_002601_140 Hb_002078_320 Hb_002078_320 Hb_000260_750--Hb_002078_320 Hb_001310_060 Hb_001310_060 Hb_004832_010--Hb_001310_060 Hb_000359_180 Hb_000359_180 Hb_004832_010--Hb_000359_180 Hb_019570_010 Hb_019570_010 Hb_004832_010--Hb_019570_010 Hb_004832_010--Hb_004446_060 Hb_001437_260 Hb_001437_260 Hb_004832_010--Hb_001437_260 Hb_023771_030 Hb_023771_030 Hb_002851_070--Hb_023771_030 Hb_000152_120 Hb_000152_120 Hb_002851_070--Hb_000152_120 Hb_002851_070--Hb_004446_060 Hb_007007_130 Hb_007007_130 Hb_002851_070--Hb_007007_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0532473 1.21935 9.82145 3.61624 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0769206 0.100868 0.0762585 3.88909 5.60742

CAGE analysis