Hb_001500_100

Information

Type -
Description -
Location Contig1500: 112358-116646
Sequence    

Annotation

kegg
ID rcu:RCOM_1437500
description hypothetical protein
nr
ID XP_002512622.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8GZA4
description CBS domain-containing protein CBSX6 OS=Arabidopsis thaliana GN=CBSX6 PE=1 SV=1
trembl
ID B9RFV3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1437500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12538: 112382-116665 , PASA_asmbl_12540: 115503-115701
cDNA
(Sanger)
(ID:Location)		 034_J05.ab1: 115772-116663 , 035_E24.ab1: 115765-116663

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001500_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003020_100 0.061499711 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
3 Hb_000322_080 0.0642101761 - - hypothetical protein JCGZ_07423 [Jatropha curcas]
4 Hb_019280_010 0.0729405839 - - PREDICTED: F-box protein At5g39450 isoform X2 [Jatropha curcas]
5 Hb_003544_050 0.0761095206 - - PREDICTED: uncharacterized protein LOC105644300 isoform X1 [Jatropha curcas]
6 Hb_001434_080 0.0771507118 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
7 Hb_006452_120 0.0777338061 - - PREDICTED: protein FAM188A [Jatropha curcas]
8 Hb_011016_050 0.0785368447 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Jatropha curcas]
9 Hb_000085_450 0.0786936018 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
10 Hb_006006_040 0.0799938955 - - S-methyl-5-thioribose kinase isoform 2 [Theobroma cacao]
11 Hb_005663_110 0.0809018588 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
12 Hb_103684_010 0.0823083846 - - PREDICTED: cullin-1 isoform X3 [Nicotiana tomentosiformis]
13 Hb_003544_030 0.083616358 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
14 Hb_004450_070 0.0849073669 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
15 Hb_004030_080 0.0853901859 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
16 Hb_000140_210 0.0859978132 - - sec10, putative [Ricinus communis]
17 Hb_000237_050 0.0863910048 - - CP2 [Hevea brasiliensis]
18 Hb_000984_170 0.0865836346 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
19 Hb_012286_040 0.0872757408 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
20 Hb_001114_110 0.0875968026 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001500_100 Hb_001500_100 Hb_003020_100 Hb_003020_100 Hb_001500_100--Hb_003020_100 Hb_000322_080 Hb_000322_080 Hb_001500_100--Hb_000322_080 Hb_019280_010 Hb_019280_010 Hb_001500_100--Hb_019280_010 Hb_003544_050 Hb_003544_050 Hb_001500_100--Hb_003544_050 Hb_001434_080 Hb_001434_080 Hb_001500_100--Hb_001434_080 Hb_006452_120 Hb_006452_120 Hb_001500_100--Hb_006452_120 Hb_003020_100--Hb_000322_080 Hb_006006_040 Hb_006006_040 Hb_003020_100--Hb_006006_040 Hb_000085_450 Hb_000085_450 Hb_003020_100--Hb_000085_450 Hb_000836_460 Hb_000836_460 Hb_003020_100--Hb_000836_460 Hb_021165_010 Hb_021165_010 Hb_003020_100--Hb_021165_010 Hb_000787_160 Hb_000787_160 Hb_000322_080--Hb_000787_160 Hb_102698_010 Hb_102698_010 Hb_000322_080--Hb_102698_010 Hb_000046_500 Hb_000046_500 Hb_000322_080--Hb_000046_500 Hb_000477_100 Hb_000477_100 Hb_000322_080--Hb_000477_100 Hb_004450_070 Hb_004450_070 Hb_019280_010--Hb_004450_070 Hb_103684_010 Hb_103684_010 Hb_019280_010--Hb_103684_010 Hb_000237_050 Hb_000237_050 Hb_019280_010--Hb_000237_050 Hb_004677_050 Hb_004677_050 Hb_019280_010--Hb_004677_050 Hb_019280_010--Hb_000085_450 Hb_000140_210 Hb_000140_210 Hb_003544_050--Hb_000140_210 Hb_000809_230 Hb_000809_230 Hb_003544_050--Hb_000809_230 Hb_001377_350 Hb_001377_350 Hb_003544_050--Hb_001377_350 Hb_009296_040 Hb_009296_040 Hb_003544_050--Hb_009296_040 Hb_002749_060 Hb_002749_060 Hb_003544_050--Hb_002749_060 Hb_004679_030 Hb_004679_030 Hb_003544_050--Hb_004679_030 Hb_005663_110 Hb_005663_110 Hb_001434_080--Hb_005663_110 Hb_003544_030 Hb_003544_030 Hb_001434_080--Hb_003544_030 Hb_001500_140 Hb_001500_140 Hb_001434_080--Hb_001500_140 Hb_011016_050 Hb_011016_050 Hb_001434_080--Hb_011016_050 Hb_002989_020 Hb_002989_020 Hb_001434_080--Hb_002989_020 Hb_000327_250 Hb_000327_250 Hb_001434_080--Hb_000327_250 Hb_010515_020 Hb_010515_020 Hb_006452_120--Hb_010515_020 Hb_004030_080 Hb_004030_080 Hb_006452_120--Hb_004030_080 Hb_000574_450 Hb_000574_450 Hb_006452_120--Hb_000574_450 Hb_008748_030 Hb_008748_030 Hb_006452_120--Hb_008748_030 Hb_000984_170 Hb_000984_170 Hb_006452_120--Hb_000984_170 Hb_000012_310 Hb_000012_310 Hb_006452_120--Hb_000012_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.5857 23.7584 16.2986 37.6338 11.0388 19.7854
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.1342 11.3113 20.5793 33.6845 20.3796

CAGE analysis