Hb_001500_130

Information

Type -
Description -
Location Contig1500: 128480-140665
Sequence    

Annotation

kegg
ID rcu:RCOM_1437440
description interferon-induced GTP-binding protein mx, putative
nr
ID XP_002512616.1
description interferon-induced GTP-binding protein mx, putative [Ricinus communis]
swissprot
ID Q9ZP55
description Dynamin-related protein 4C OS=Arabidopsis thaliana GN=DRP4C PE=2 SV=1
trembl
ID B9RFU7
description Interferon-induced GTP-binding protein mx, putative OS=Ricinus communis GN=RCOM_1437440 PE=4 SV=1
Gene Ontology
ID GO:0003924
description dynamin-related protein 4c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12545: 137561-138025
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001500_130 0.0 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
2 Hb_001433_090 0.0644005755 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
3 Hb_000002_110 0.067618145 - - hypothetical protein EUGRSUZ_B02140 [Eucalyptus grandis]
4 Hb_010589_010 0.0693567326 - - PREDICTED: classical arabinogalactan protein 9-like [Jatropha curcas]
5 Hb_005010_030 0.0789154796 - - PREDICTED: lecithin-cholesterol acyltransferase-like 1 [Jatropha curcas]
6 Hb_000083_210 0.0809487566 - - Major facilitator superfamily protein, putative [Theobroma cacao]
7 Hb_002477_190 0.0850106316 - - hypothetical protein EUGRSUZ_C03380, partial [Eucalyptus grandis]
8 Hb_020956_030 0.0860530684 - - PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]
9 Hb_000749_300 0.0868864441 - - PREDICTED: uncharacterized protein LOC105129180 [Populus euphratica]
10 Hb_001541_200 0.0885432013 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
11 Hb_000017_180 0.0905595746 - - hypothetical protein JCGZ_20551 [Jatropha curcas]
12 Hb_005183_050 0.0911363728 - - hypothetical protein RCOM_1590900 [Ricinus communis]
13 Hb_007483_090 0.0918261975 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000031_180 0.0934556593 - - sarcosine oxidase, putative [Ricinus communis]
15 Hb_001711_140 0.0954315714 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
16 Hb_026549_060 0.0958133143 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
17 Hb_001397_020 0.0962846033 - - cytochrome P450 family protein [Populus trichocarpa]
18 Hb_002062_010 0.096844697 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
19 Hb_029587_010 0.096912559 - - G-type lectin S-receptor-like serine/threonine-protein kinase [Glycine soja]
20 Hb_027472_060 0.0975033302 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]

Gene co-expression network

sample Hb_001500_130 Hb_001500_130 Hb_001433_090 Hb_001433_090 Hb_001500_130--Hb_001433_090 Hb_000002_110 Hb_000002_110 Hb_001500_130--Hb_000002_110 Hb_010589_010 Hb_010589_010 Hb_001500_130--Hb_010589_010 Hb_005010_030 Hb_005010_030 Hb_001500_130--Hb_005010_030 Hb_000083_210 Hb_000083_210 Hb_001500_130--Hb_000083_210 Hb_002477_190 Hb_002477_190 Hb_001500_130--Hb_002477_190 Hb_026549_060 Hb_026549_060 Hb_001433_090--Hb_026549_060 Hb_001433_090--Hb_000002_110 Hb_001433_090--Hb_010589_010 Hb_005183_050 Hb_005183_050 Hb_001433_090--Hb_005183_050 Hb_020956_030 Hb_020956_030 Hb_001433_090--Hb_020956_030 Hb_000002_110--Hb_010589_010 Hb_001397_020 Hb_001397_020 Hb_000002_110--Hb_001397_020 Hb_000002_110--Hb_005183_050 Hb_000002_110--Hb_020956_030 Hb_010589_010--Hb_001397_020 Hb_029587_010 Hb_029587_010 Hb_010589_010--Hb_029587_010 Hb_003549_100 Hb_003549_100 Hb_010589_010--Hb_003549_100 Hb_001711_140 Hb_001711_140 Hb_005010_030--Hb_001711_140 Hb_005010_030--Hb_002477_190 Hb_000462_010 Hb_000462_010 Hb_005010_030--Hb_000462_010 Hb_006615_090 Hb_006615_090 Hb_005010_030--Hb_006615_090 Hb_005678_020 Hb_005678_020 Hb_005010_030--Hb_005678_020 Hb_005843_010 Hb_005843_010 Hb_005010_030--Hb_005843_010 Hb_000749_300 Hb_000749_300 Hb_000083_210--Hb_000749_300 Hb_000083_210--Hb_005010_030 Hb_002246_030 Hb_002246_030 Hb_000083_210--Hb_002246_030 Hb_001047_210 Hb_001047_210 Hb_000083_210--Hb_001047_210 Hb_000083_210--Hb_001433_090 Hb_002477_190--Hb_001711_140 Hb_002477_190--Hb_006615_090 Hb_002477_190--Hb_029587_010 Hb_001199_110 Hb_001199_110 Hb_002477_190--Hb_001199_110 Hb_144550_010 Hb_144550_010 Hb_002477_190--Hb_144550_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.35253 1.52111 3.60537 0.00735623 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0178388 0.0140371 0.026755 0.0445963 4.32556

CAGE analysis