Hb_001502_010

Information

Type -
Description -
Location Contig1502: 11203-11472
Sequence    

Annotation

kegg
ID tcc:TCM_033854
description Calcium-binding EF-hand family protein, putative
nr
ID KDP38363.1
description hypothetical protein JCGZ_04288 [Jatropha curcas]
swissprot
ID O22845
description Calmodulin-like protein 5 OS=Arabidopsis thaliana GN=CML5 PE=2 SV=2
trembl
ID A0A067KTR6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04288 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12575: 11124-11504
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001502_010 0.0 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
2 Hb_008200_010 0.0633930689 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
3 Hb_027402_110 0.0897634103 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
4 Hb_000007_020 0.0911228495 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
5 Hb_000201_050 0.0927203374 - - -
6 Hb_001584_250 0.0935769899 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
7 Hb_000429_080 0.0963628124 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002374_070 0.1012848084 - - amino acid transporter, putative [Ricinus communis]
9 Hb_008566_070 0.1029654659 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005695_050 0.1046177984 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
11 Hb_032299_020 0.1079581552 - - tonoplast intrinsic protein, putative [Ricinus communis]
12 Hb_006590_040 0.1117234605 - - amino acid permease, putative [Ricinus communis]
13 Hb_001766_140 0.1170379467 - - hypothetical protein JCGZ_18656 [Jatropha curcas]
14 Hb_009851_120 0.1193386405 - - PREDICTED: RING-H2 zinc finger protein RHA4a [Jatropha curcas]
15 Hb_004125_080 0.11934682 - - PREDICTED: dCTP pyrophosphatase 1-like [Populus euphratica]
16 Hb_001255_030 0.121604109 - - PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840, partial [Sesamum indicum]
17 Hb_000628_100 0.123926524 - - hypothetical protein MTR_1g019660 [Medicago truncatula]
18 Hb_000227_350 0.1273533738 - - hypothetical protein CICLE_v10006537mg [Citrus clementina]
19 Hb_000422_060 0.1275560286 transcription factor TF Family: OFP hypothetical protein RCOM_1282480 [Ricinus communis]
20 Hb_002025_190 0.1305154087 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]

Gene co-expression network

sample Hb_001502_010 Hb_001502_010 Hb_008200_010 Hb_008200_010 Hb_001502_010--Hb_008200_010 Hb_027402_110 Hb_027402_110 Hb_001502_010--Hb_027402_110 Hb_000007_020 Hb_000007_020 Hb_001502_010--Hb_000007_020 Hb_000201_050 Hb_000201_050 Hb_001502_010--Hb_000201_050 Hb_001584_250 Hb_001584_250 Hb_001502_010--Hb_001584_250 Hb_000429_080 Hb_000429_080 Hb_001502_010--Hb_000429_080 Hb_006590_040 Hb_006590_040 Hb_008200_010--Hb_006590_040 Hb_002374_070 Hb_002374_070 Hb_008200_010--Hb_002374_070 Hb_005695_050 Hb_005695_050 Hb_008200_010--Hb_005695_050 Hb_008200_010--Hb_027402_110 Hb_008200_010--Hb_000007_020 Hb_001766_140 Hb_001766_140 Hb_027402_110--Hb_001766_140 Hb_001675_260 Hb_001675_260 Hb_027402_110--Hb_001675_260 Hb_001255_030 Hb_001255_030 Hb_027402_110--Hb_001255_030 Hb_027402_110--Hb_005695_050 Hb_000007_020--Hb_006590_040 Hb_000007_020--Hb_001584_250 Hb_002116_020 Hb_002116_020 Hb_000007_020--Hb_002116_020 Hb_000007_020--Hb_000201_050 Hb_003711_050 Hb_003711_050 Hb_000201_050--Hb_003711_050 Hb_032260_040 Hb_032260_040 Hb_000201_050--Hb_032260_040 Hb_000201_050--Hb_001584_250 Hb_027746_030 Hb_027746_030 Hb_000201_050--Hb_027746_030 Hb_000422_060 Hb_000422_060 Hb_000201_050--Hb_000422_060 Hb_032299_020 Hb_032299_020 Hb_001584_250--Hb_032299_020 Hb_001584_250--Hb_000429_080 Hb_000438_180 Hb_000438_180 Hb_001584_250--Hb_000438_180 Hb_009851_120 Hb_009851_120 Hb_001584_250--Hb_009851_120 Hb_000429_080--Hb_032299_020 Hb_000429_080--Hb_009851_120 Hb_006187_020 Hb_006187_020 Hb_000429_080--Hb_006187_020 Hb_000999_060 Hb_000999_060 Hb_000429_080--Hb_000999_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.213442 49.818 10.0109 164.437 1.6478 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.733575 9.064

CAGE analysis