Hb_001504_010

Information

Type -
Description -
Location Contig1504: 9399-24204
Sequence    

Annotation

kegg
ID pop:POPTR_0007s07820g
description POPTRDRAFT_562828; hypothetical protein
nr
ID XP_012086354.1
description PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
swissprot
ID Q92546
description RAB6A-GEF complex partner protein 2 OS=Homo sapiens GN=RGP1 PE=1 SV=1
trembl
ID A0A067JPF5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22876 PE=4 SV=1
Gene Ontology
ID GO:0042546
description immunoglobulin e-set

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12625: 9250-24201 , PASA_asmbl_12626: 9250-15044
cDNA
(Sanger)
(ID:Location)		 024_E24.ab1: 9250-12064 , 027_B21.ab1: 9250-12043

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001504_010 0.0 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
2 Hb_007483_070 0.0480644372 - - PREDICTED: intersectin-1 isoform X1 [Populus euphratica]
3 Hb_021596_020 0.0610650054 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
4 Hb_000163_260 0.0632376045 - - PREDICTED: uncharacterized protein LOC105642518 [Jatropha curcas]
5 Hb_000579_080 0.0668650036 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
6 Hb_008304_020 0.068114396 - - PREDICTED: ATP-dependent RNA helicase DBP2-like [Jatropha curcas]
7 Hb_000815_300 0.0683886798 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
8 Hb_012633_050 0.068614691 - - zinc finger protein, putative [Ricinus communis]
9 Hb_001279_190 0.0692847692 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
10 Hb_000029_400 0.0693400043 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1 [Jatropha curcas]
11 Hb_000120_890 0.0696122782 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
12 Hb_001703_040 0.0713549329 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
13 Hb_001635_110 0.0733483181 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
14 Hb_003498_100 0.0749152171 - - component of oligomeric golgi complex, putative [Ricinus communis]
15 Hb_011716_010 0.0749492335 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
16 Hb_004531_150 0.0754313035 - - PREDICTED: peroxisome biogenesis protein 2 isoform X1 [Jatropha curcas]
17 Hb_016448_010 0.0758231462 - - Protein MYG1, putative [Ricinus communis]
18 Hb_002684_020 0.0770367937 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
19 Hb_000788_030 0.0780217477 - - PREDICTED: dynamin-2A [Jatropha curcas]
20 Hb_001159_060 0.0800559871 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]

Gene co-expression network

sample Hb_001504_010 Hb_001504_010 Hb_007483_070 Hb_007483_070 Hb_001504_010--Hb_007483_070 Hb_021596_020 Hb_021596_020 Hb_001504_010--Hb_021596_020 Hb_000163_260 Hb_000163_260 Hb_001504_010--Hb_000163_260 Hb_000579_080 Hb_000579_080 Hb_001504_010--Hb_000579_080 Hb_008304_020 Hb_008304_020 Hb_001504_010--Hb_008304_020 Hb_000815_300 Hb_000815_300 Hb_001504_010--Hb_000815_300 Hb_001279_190 Hb_001279_190 Hb_007483_070--Hb_001279_190 Hb_007483_070--Hb_008304_020 Hb_007483_070--Hb_000815_300 Hb_000120_890 Hb_000120_890 Hb_007483_070--Hb_000120_890 Hb_011716_010 Hb_011716_010 Hb_007483_070--Hb_011716_010 Hb_002684_020 Hb_002684_020 Hb_021596_020--Hb_002684_020 Hb_016448_010 Hb_016448_010 Hb_021596_020--Hb_016448_010 Hb_000748_090 Hb_000748_090 Hb_021596_020--Hb_000748_090 Hb_006438_020 Hb_006438_020 Hb_021596_020--Hb_006438_020 Hb_012633_050 Hb_012633_050 Hb_021596_020--Hb_012633_050 Hb_001882_010 Hb_001882_010 Hb_000163_260--Hb_001882_010 Hb_012438_030 Hb_012438_030 Hb_000163_260--Hb_012438_030 Hb_009476_130 Hb_009476_130 Hb_000163_260--Hb_009476_130 Hb_001703_040 Hb_001703_040 Hb_000163_260--Hb_001703_040 Hb_000163_260--Hb_000120_890 Hb_000926_060 Hb_000926_060 Hb_000579_080--Hb_000926_060 Hb_000579_080--Hb_012633_050 Hb_000229_050 Hb_000229_050 Hb_000579_080--Hb_000229_050 Hb_008206_080 Hb_008206_080 Hb_000579_080--Hb_008206_080 Hb_000579_080--Hb_008304_020 Hb_001635_110 Hb_001635_110 Hb_008304_020--Hb_001635_110 Hb_006189_020 Hb_006189_020 Hb_008304_020--Hb_006189_020 Hb_003098_070 Hb_003098_070 Hb_008304_020--Hb_003098_070 Hb_159809_070 Hb_159809_070 Hb_008304_020--Hb_159809_070 Hb_002552_040 Hb_002552_040 Hb_000815_300--Hb_002552_040 Hb_006970_020 Hb_006970_020 Hb_000815_300--Hb_006970_020 Hb_000406_210 Hb_000406_210 Hb_000815_300--Hb_000406_210 Hb_000078_140 Hb_000078_140 Hb_000815_300--Hb_000078_140 Hb_001141_240 Hb_001141_240 Hb_000815_300--Hb_001141_240 Hb_074197_040 Hb_074197_040 Hb_000815_300--Hb_074197_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.6663 4.35014 9.81969 6.7389 3.13626 2.53499
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.62331 3.30271 2.2693 4.89111 6.61648

CAGE analysis