Hb_001504_050

Information

Type -
Description -
Location Contig1504: 45499-45843
Sequence    

Annotation

kegg
ID pop:POPTR_0001s14840g
description hypothetical protein
nr
ID XP_006368923.1
description hypothetical protein POPTR_0001s14840g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GVQ6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s14840g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12636: 42896-45885
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001504_050 0.0 - - hypothetical protein POPTR_0001s14840g [Populus trichocarpa]
2 Hb_000699_040 0.1200591708 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
3 Hb_004052_020 0.1217412049 - - Mitochondrial import receptor subunit TOM5 [Theobroma cacao]
4 Hb_003058_080 0.1285907359 - - Chaperonin 10 isoform 1 [Theobroma cacao]
5 Hb_000451_060 0.1315913148 - - hypothetical protein CICLE_v10010074mg [Citrus clementina]
6 Hb_000191_030 0.1325602392 - - hypothetical protein POPTR_0012s07830g [Populus trichocarpa]
7 Hb_000297_230 0.1333157755 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
8 Hb_002081_070 0.1365709621 - - PREDICTED: pyridoxal kinase [Jatropha curcas]
9 Hb_003185_110 0.1369935827 - - PREDICTED: cytochrome b-c1 complex subunit 7-2 [Nelumbo nucifera]
10 Hb_027760_010 0.1417897035 - - PREDICTED: uncharacterized protein LOC105630460 [Jatropha curcas]
11 Hb_002900_160 0.146003428 - - PREDICTED: immediate early response 3-interacting protein 1-like [Jatropha curcas]
12 Hb_000144_080 0.1465481915 - - PREDICTED: uncharacterized protein LOC104609774 [Nelumbo nucifera]
13 Hb_002045_040 0.1506162384 - - PREDICTED: protein OSB2, chloroplastic-like isoform X1 [Jatropha curcas]
14 Hb_002374_170 0.1535036688 - - 20S proteasome beta subunit C1 [Hevea brasiliensis]
15 Hb_003053_010 0.1539500717 - - PREDICTED: uncharacterized protein LOC105641481 isoform X2 [Jatropha curcas]
16 Hb_009486_150 0.1543227074 - - 60S ribosomal protein L37a-2 [Medicago truncatula]
17 Hb_002783_270 0.1543611131 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
18 Hb_076693_040 0.1550536867 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
19 Hb_001143_220 0.1559407589 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]
20 Hb_003683_110 0.1561318244 - - JHL10I11.3 [Jatropha curcas]

Gene co-expression network

sample Hb_001504_050 Hb_001504_050 Hb_000699_040 Hb_000699_040 Hb_001504_050--Hb_000699_040 Hb_004052_020 Hb_004052_020 Hb_001504_050--Hb_004052_020 Hb_003058_080 Hb_003058_080 Hb_001504_050--Hb_003058_080 Hb_000451_060 Hb_000451_060 Hb_001504_050--Hb_000451_060 Hb_000191_030 Hb_000191_030 Hb_001504_050--Hb_000191_030 Hb_000297_230 Hb_000297_230 Hb_001504_050--Hb_000297_230 Hb_000699_040--Hb_004052_020 Hb_003638_080 Hb_003638_080 Hb_000699_040--Hb_003638_080 Hb_001214_140 Hb_001214_140 Hb_000699_040--Hb_001214_140 Hb_012753_230 Hb_012753_230 Hb_000699_040--Hb_012753_230 Hb_004724_160 Hb_004724_160 Hb_000699_040--Hb_004724_160 Hb_004052_020--Hb_012753_230 Hb_000057_070 Hb_000057_070 Hb_004052_020--Hb_000057_070 Hb_004052_020--Hb_003058_080 Hb_012573_070 Hb_012573_070 Hb_004052_020--Hb_012573_070 Hb_002900_160 Hb_002900_160 Hb_004052_020--Hb_002900_160 Hb_000948_210 Hb_000948_210 Hb_004052_020--Hb_000948_210 Hb_002783_270 Hb_002783_270 Hb_003058_080--Hb_002783_270 Hb_007044_130 Hb_007044_130 Hb_003058_080--Hb_007044_130 Hb_003058_080--Hb_012753_230 Hb_000046_560 Hb_000046_560 Hb_003058_080--Hb_000046_560 Hb_047823_010 Hb_047823_010 Hb_003058_080--Hb_047823_010 Hb_000451_060--Hb_000191_030 Hb_004871_020 Hb_004871_020 Hb_000451_060--Hb_004871_020 Hb_000451_060--Hb_004052_020 Hb_153544_010 Hb_153544_010 Hb_000451_060--Hb_153544_010 Hb_000317_070 Hb_000317_070 Hb_000451_060--Hb_000317_070 Hb_001221_310 Hb_001221_310 Hb_000451_060--Hb_001221_310 Hb_000191_030--Hb_004871_020 Hb_000191_030--Hb_153544_010 Hb_019516_100 Hb_019516_100 Hb_000191_030--Hb_019516_100 Hb_000191_030--Hb_000317_070 Hb_000111_340 Hb_000111_340 Hb_000191_030--Hb_000111_340 Hb_003053_010 Hb_003053_010 Hb_000297_230--Hb_003053_010 Hb_002768_030 Hb_002768_030 Hb_000297_230--Hb_002768_030 Hb_000297_230--Hb_000948_210 Hb_002217_050 Hb_002217_050 Hb_000297_230--Hb_002217_050 Hb_077354_010 Hb_077354_010 Hb_000297_230--Hb_077354_010 Hb_003683_110 Hb_003683_110 Hb_000297_230--Hb_003683_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.78456 2.8745 11.8021 4.24488 7.86761 5.76524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.4974 23.7425 3.86085 3.11785 1.40652

CAGE analysis